Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX03_RS04200 Genome accession   NZ_CP025892
Coordinates   877536..878165 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 503025     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 872536..883165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX03_RS04180 ycbZ 872925..874685 (-) 1761 WP_000156526.1 Lon protease family protein -
  CXX03_RS04185 matP 874871..875323 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXX03_RS04190 ompA 875399..876451 (-) 1053 WP_000750419.1 porin OmpA -
  CXX03_RS04195 sulA 876808..877317 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX03_RS04200 sxy/tfoX 877536..878165 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX03_RS04205 yccS 878128..880290 (-) 2163 WP_000875015.1 YccS family putative transporter -
  CXX03_RS04210 yccF 880300..880746 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXX03_RS04215 helD 880869..882923 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264363 CXX03_RS04200 WP_000839153.1 877536..878165(+) (sxy/tfoX) [Escherichia coli strain 503025]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264363 CXX03_RS04200 WP_000839153.1 877536..878165(+) (sxy/tfoX) [Escherichia coli strain 503025]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment