Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX08_RS19365 Genome accession   NZ_CP025869
Coordinates   3865578..3866207 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 503829     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3860578..3871207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX08_RS19350 helD 3860820..3862874 (-) 2055 WP_001297106.1 DNA helicase IV -
  CXX08_RS19355 yccF 3862997..3863443 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CXX08_RS19360 yccS 3863453..3865615 (+) 2163 WP_000875015.1 YccS family putative transporter -
  CXX08_RS19365 sxy/tfoX 3865578..3866207 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX08_RS19370 sulA 3866426..3866935 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX08_RS19375 ompA 3867292..3868344 (+) 1053 WP_000750419.1 porin OmpA -
  CXX08_RS19380 matP 3868420..3868872 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXX08_RS19385 ycbZ 3869058..3870818 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264336 CXX08_RS19365 WP_000839153.1 3865578..3866207(-) (sxy/tfoX) [Escherichia coli strain 503829]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264336 CXX08_RS19365 WP_000839153.1 3865578..3866207(-) (sxy/tfoX) [Escherichia coli strain 503829]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment