Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX10_RS06850 Genome accession   NZ_CP025862
Coordinates   1428088..1428717 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 504237     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423088..1433717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX10_RS06830 ycbZ 1423478..1425238 (-) 1761 WP_000156526.1 Lon protease family protein -
  CXX10_RS06835 matP 1425424..1425876 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXX10_RS06840 ompA 1425951..1427003 (-) 1053 WP_000750419.1 porin OmpA -
  CXX10_RS06845 sulA 1427360..1427869 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX10_RS06850 sxy/tfoX 1428088..1428717 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX10_RS06855 yccS 1428680..1430842 (-) 2163 WP_000875015.1 YccS family putative transporter -
  CXX10_RS06860 yccF 1430852..1431298 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXX10_RS06865 helD 1431421..1433475 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264275 CXX10_RS06850 WP_000839153.1 1428088..1428717(+) (sxy/tfoX) [Escherichia coli strain 504237]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264275 CXX10_RS06850 WP_000839153.1 1428088..1428717(+) (sxy/tfoX) [Escherichia coli strain 504237]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment