Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXV92_RS23160 Genome accession   NZ_CP025859
Coordinates   4735502..4736131 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 504239     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4730502..4741131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV92_RS23140 ycbZ 4730903..4732663 (-) 1761 WP_000156518.1 Lon protease family protein -
  CXV92_RS23145 matP 4732849..4733301 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXV92_RS23150 ompA 4733377..4734417 (-) 1041 WP_000750416.1 porin OmpA -
  CXV92_RS23155 sulA 4734774..4735283 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXV92_RS23160 sxy/tfoX 4735502..4736131 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXV92_RS23165 yccS 4736094..4738256 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CXV92_RS23170 yccF 4738266..4738712 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXV92_RS23175 helD 4738835..4740889 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264272 CXV92_RS23160 WP_000839153.1 4735502..4736131(+) (sxy/tfoX) [Escherichia coli strain 504239]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264272 CXV92_RS23160 WP_000839153.1 4735502..4736131(+) (sxy/tfoX) [Escherichia coli strain 504239]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment