Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXV93_RS05755 Genome accession   NZ_CP025856
Coordinates   1098445..1099074 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 504838     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093445..1104074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV93_RS05740 helD 1093687..1095741 (-) 2055 WP_000420533.1 DNA helicase IV -
  CXV93_RS05745 yccF 1095864..1096310 (+) 447 WP_001261231.1 YccF domain-containing protein -
  CXV93_RS05750 yccS 1096320..1098482 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CXV93_RS05755 sxy/tfoX 1098445..1099074 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXV93_RS05760 sulA 1099293..1099802 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXV93_RS05765 ompA 1100159..1101211 (+) 1053 WP_000750419.1 porin OmpA -
  CXV93_RS05770 matP 1101286..1101738 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXV93_RS05775 ycbZ 1101924..1103684 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264230 CXV93_RS05755 WP_000839153.1 1098445..1099074(-) (sxy/tfoX) [Escherichia coli strain 504838]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264230 CXV93_RS05755 WP_000839153.1 1098445..1099074(-) (sxy/tfoX) [Escherichia coli strain 504838]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment