Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX14_RS20870 Genome accession   NZ_CP025849
Coordinates   4331027..4331656 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 600468     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4326027..4336656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX14_RS20855 helD 4326269..4328323 (-) 2055 WP_000420533.1 DNA helicase IV -
  CXX14_RS20860 yccF 4328446..4328892 (+) 447 WP_001261231.1 YccF domain-containing protein -
  CXX14_RS20865 yccS 4328902..4331064 (+) 2163 WP_000875023.1 YccS family putative transporter -
  CXX14_RS20870 sxy/tfoX 4331027..4331656 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX14_RS20875 sulA 4331875..4332384 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX14_RS20880 ompA 4332741..4333793 (+) 1053 WP_000750419.1 porin OmpA -
  CXX14_RS20885 matP 4333868..4334320 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXX14_RS20890 ycbZ 4334506..4336266 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264205 CXX14_RS20870 WP_000839153.1 4331027..4331656(-) (sxy/tfoX) [Escherichia coli strain 600468]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264205 CXX14_RS20870 WP_000839153.1 4331027..4331656(-) (sxy/tfoX) [Escherichia coli strain 600468]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment