Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DV175_RS08075 Genome accession   NZ_CP031324
Coordinates   1359947..1361326 (+) Length   459 a.a.
NCBI ID   WP_002235637.1    Uniprot ID   Q9K040
Organism   Neisseria meningitidis strain M23347     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1354947..1366326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS08055 - 1355295..1356056 (+) 762 WP_002236850.1 uroporphyrinogen-III synthase -
  DV175_RS08060 - 1356131..1357405 (+) 1275 WP_077143008.1 uroporphyrinogen-III C-methyltransferase -
  DV175_RS08065 - 1357402..1358619 (+) 1218 WP_002237824.1 heme biosynthesis protein HemY -
  DV175_RS08070 hemE 1358694..1359758 (+) 1065 WP_002237825.1 uroporphyrinogen decarboxylase -
  DV175_RS13770 - 1359711..1359890 (-) 180 WP_153319881.1 hypothetical protein -
  DV175_RS08075 radA/sms 1359947..1361326 (+) 1380 WP_002235637.1 DNA repair protein RadA Machinery gene
  DV175_RS08085 - 1361602..1362081 (-) 480 WP_002237826.1 DUF302 domain-containing protein -
  DV175_RS08090 - 1362213..1362572 (-) 360 WP_061375733.1 rhodanese-like domain-containing protein -
  DV175_RS08095 recB 1362611..1366225 (-) 3615 WP_101120674.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49533.03 Da        Isoelectric Point: 7.3292

>NTDB_id=264198 DV175_RS08075 WP_002235637.1 1359947..1361326(+) (radA/sms) [Neisseria meningitidis strain M23347]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=264198 DV175_RS08075 WP_002235637.1 1359947..1361326(+) (radA/sms) [Neisseria meningitidis strain M23347]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACCTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCGACCGACGGCGTAAACCTTCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCTAATTATCGAATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTATTCGCTAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAAGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGTTTCACC
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGACATGGCGGCATTGC
CTGTTTCGACCAAGACGTATTCCTTAACGCCGTCGGCGGCGTCAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGTGACAGCAGGGAATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K040

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466

Multiple sequence alignment