Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV175_RS04850 Genome accession   NZ_CP031324
Coordinates   832468..832974 (-) Length   168 a.a.
NCBI ID   WP_002226759.1    Uniprot ID   Q9JWB0
Organism   Neisseria meningitidis strain M23347     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 827468..837974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS04845 polA 829530..832322 (-) 2793 WP_061837792.1 DNA polymerase I -
  DV175_RS04850 luxS 832468..832974 (-) 507 WP_002226759.1 S-ribosylhomocysteine lyase Regulator
  DV175_RS04855 cyaY 833029..833352 (-) 324 WP_002226758.1 iron donor protein CyaY -
  DV175_RS04860 - 833423..833593 (+) 171 WP_002218098.1 lipoprotein -
  DV175_RS04865 lysA 833604..834824 (+) 1221 WP_061837791.1 diaminopimelate decarboxylase -
  DV175_RS04870 - 834884..834976 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DV175_RS04875 - 834973..836508 (-) 1536 WP_002221654.1 sodium-dependent transporter -
  DV175_RS04880 - 836721..837374 (-) 654 WP_002223110.1 IS1595 family transposase -
  DV175_RS04885 - 837603..837893 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18725.49 Da        Isoelectric Point: 5.5451

>NTDB_id=264181 DV175_RS04850 WP_002226759.1 832468..832974(-) (luxS) [Neisseria meningitidis strain M23347]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=264181 DV175_RS04850 WP_002226759.1 832468..832974(-) (luxS) [Neisseria meningitidis strain M23347]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACTAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCCGGCTTTATGCGCGACCACTTGAACGGAAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768