Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DV175_RS04770 Genome accession   NZ_CP031324
Coordinates   813102..814070 (-) Length   322 a.a.
NCBI ID   WP_115437371.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808102..819070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS04745 - 809920..810132 (-) 213 WP_003710665.1 hypothetical protein -
  DV175_RS04750 - 810227..810565 (+) 339 WP_002214902.1 P-II family nitrogen regulator -
  DV175_RS04755 - 810624..811382 (-) 759 WP_061386094.1 ABC transporter ATP-binding protein -
  DV175_RS04760 - 811467..812093 (-) 627 WP_061837708.1 FmdE family protein -
  DV175_RS04765 - 812138..813112 (-) 975 WP_061837707.1 iron chelate uptake ABC transporter family permease subunit -
  DV175_RS04770 ceuB 813102..814070 (-) 969 WP_115437371.1 ABC transporter permease Machinery gene
  DV175_RS13605 - 814067..814216 (-) 150 WP_162051164.1 hypothetical protein -
  DV175_RS04775 - 814234..815199 (-) 966 WP_061726162.1 siderophore ABC transporter substrate-binding protein -
  DV175_RS04780 fetA 815916..818090 (-) 2175 WP_115437372.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34399.66 Da        Isoelectric Point: 10.0891

>NTDB_id=264180 DV175_RS04770 WP_115437371.1 813102..814070(-) (ceuB) [Neisseria meningitidis strain M23347]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPAKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=264180 DV175_RS04770 WP_115437371.1 813102..814070(-) (ceuB) [Neisseria meningitidis strain M23347]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCGGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGCGAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGGATGTTGGTGTTTATGATGCTTATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCTTTGGTCGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCCACCTTTATTGCGTAT
GAAAACGAAATGCTGCAAATGCTGGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTAAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCTTTGCTGGGTGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGGACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment