Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX15_RS17800 Genome accession   NZ_CP025847
Coordinates   3699022..3699651 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 602354     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3694022..3704651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX15_RS17780 ycbZ 3694412..3696172 (-) 1761 WP_000156526.1 Lon protease family protein -
  CXX15_RS17785 matP 3696358..3696810 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXX15_RS17790 ompA 3696885..3697937 (-) 1053 WP_000750419.1 porin OmpA -
  CXX15_RS17795 sulA 3698294..3698803 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX15_RS17800 sxy/tfoX 3699022..3699651 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX15_RS17805 yccS 3699614..3701776 (-) 2163 WP_000875015.1 YccS family putative transporter -
  CXX15_RS17810 yccF 3701786..3702232 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXX15_RS17815 helD 3702355..3704409 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264180 CXX15_RS17800 WP_000839153.1 3699022..3699651(+) (sxy/tfoX) [Escherichia coli strain 602354]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264180 CXX15_RS17800 WP_000839153.1 3699022..3699651(+) (sxy/tfoX) [Escherichia coli strain 602354]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment