Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX37_RS06450 Genome accession   NZ_CP025842
Coordinates   1218734..1219363 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 720632     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1213734..1224363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX37_RS06435 helD 1213976..1216030 (-) 2055 WP_001295354.1 DNA helicase IV -
  CXX37_RS06440 yccF 1216153..1216599 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CXX37_RS06445 yccS 1216609..1218771 (+) 2163 WP_074638199.1 YccS family putative transporter -
  CXX37_RS06450 sxy/tfoX 1218734..1219363 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX37_RS06455 sulA 1219582..1220091 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX37_RS06460 ompA 1220448..1221488 (+) 1041 WP_000750416.1 porin OmpA -
  CXX37_RS06465 matP 1221564..1222016 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXX37_RS06470 ycbZ 1222202..1223962 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264143 CXX37_RS06450 WP_000839153.1 1218734..1219363(-) (sxy/tfoX) [Escherichia coli strain 720632]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264143 CXX37_RS06450 WP_000839153.1 1218734..1219363(-) (sxy/tfoX) [Escherichia coli strain 720632]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment