Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DW289_RS16100 Genome accession   NZ_CP031321
Coordinates   3183390..3183995 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3178390..3188995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW289_RS26150 - 3178945..3179043 (+) 99 Protein_2926 hypothetical protein -
  DW289_RS16065 (DW289_16065) rsmS 3179094..3179255 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DW289_RS16070 (DW289_16070) priC 3179269..3179796 (-) 528 WP_000844849.1 primosomal replication protein N'' -
  DW289_RS16075 (DW289_16075) ybaN 3179866..3180243 (+) 378 WP_001188905.1 DUF454 family protein -
  DW289_RS16085 (DW289_16085) apt 3180396..3180947 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DW289_RS16090 (DW289_16090) dnaX 3181076..3182587 (+) 1512 WP_250115248.1 DNA polymerase III subunit gamma/tau -
  DW289_RS25915 - 3182544..3183008 (+) 465 WP_250115249.1 DNA polymerase III subunit gamma/tau C-terminal domain-containing protein -
  DW289_RS16095 (DW289_16095) ybaB 3183061..3183390 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DW289_RS16100 (DW289_16100) recR 3183390..3183995 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DW289_RS16105 (DW289_16105) htpG 3184105..3185979 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  DW289_RS16115 (DW289_16115) adk 3186160..3186804 (+) 645 WP_001220233.1 adenylate kinase -
  DW289_RS16120 (DW289_16120) hemH 3187040..3188002 (+) 963 WP_001250096.1 ferrochelatase -
  DW289_RS16125 (DW289_16125) aes 3187999..3188958 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=264141 DW289_RS16100 WP_001195025.1 3183390..3183995(+) (recR) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=264141 DW289_RS16100 WP_001195025.1 3183390..3183995(+) (recR) [Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443