Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXX41_RS24810 Genome accession   NZ_CP025840
Coordinates   4977636..4978265 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 214-4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4972636..4983265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX41_RS24795 helD 4972878..4974932 (-) 2055 WP_001338439.1 DNA helicase IV -
  CXX41_RS24800 yccF 4975055..4975501 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CXX41_RS24805 yccS 4975511..4977673 (+) 2163 WP_000875061.1 YccS family putative transporter -
  CXX41_RS24810 sxy/tfoX 4977636..4978265 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXX41_RS24815 sulA 4978484..4978993 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXX41_RS24820 ompA 4979350..4980390 (+) 1041 WP_000750416.1 porin OmpA -
  CXX41_RS24825 matP 4980466..4980918 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXX41_RS24830 ycbZ 4981104..4982864 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264139 CXX41_RS24810 WP_000839153.1 4977636..4978265(-) (sxy/tfoX) [Escherichia coli strain 214-4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264139 CXX41_RS24810 WP_000839153.1 4977636..4978265(-) (sxy/tfoX) [Escherichia coli strain 214-4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment