Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DWB25_RS17870 Genome accession   NZ_CP031293
Coordinates   3679832..3680437 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC17GD31     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3674832..3685437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB25_RS17850 (DWB25_18730) aes 3674973..3675932 (+) 960 WP_000801816.1 acetyl esterase -
  DWB25_RS17855 (DWB25_18735) hemH 3675929..3676891 (-) 963 WP_001250114.1 ferrochelatase -
  DWB25_RS17860 (DWB25_18740) adk 3677023..3677667 (-) 645 WP_001313630.1 adenylate kinase -
  DWB25_RS17865 (DWB25_18750) htpG 3677848..3679722 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DWB25_RS17870 (DWB25_18755) recR 3679832..3680437 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DWB25_RS17875 (DWB25_18760) ybaB 3680437..3680766 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DWB25_RS17880 (DWB25_18765) dnaX 3680819..3682750 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  DWB25_RS17885 (DWB25_18770) apt 3682879..3683430 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DWB25_RS17890 (DWB25_18780) ybaN 3683583..3683960 (-) 378 WP_001188905.1 DUF454 family protein -
  DWB25_RS17895 (DWB25_18785) priC 3684030..3684557 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  DWB25_RS17900 (DWB25_18790) rsmS 3684571..3684732 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DWB25_RS28695 - 3684785..3684883 (-) 99 Protein_3497 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=264057 DWB25_RS17870 WP_001195025.1 3679832..3680437(-) (recR) [Escherichia coli strain EC17GD31]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=264057 DWB25_RS17870 WP_001195025.1 3679832..3680437(-) (recR) [Escherichia coli strain EC17GD31]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443