Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DWB25_RS00315 Genome accession   NZ_CP031293
Coordinates   71899..72375 (-) Length   158 a.a.
NCBI ID   WP_001186188.1    Uniprot ID   -
Organism   Escherichia coli strain EC17GD31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66899..77375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB25_RS00275 (DWB25_00300) setC 67051..68235 (-) 1185 WP_001172864.1 sugar efflux transporter -
  DWB25_RS00280 (DWB25_00305) rhuM 68634..68795 (-) 162 Protein_56 RhuM family protein -
  DWB25_RS00285 (DWB25_00315) - 69033..69875 (-) 843 WP_061092922.1 DUF4942 domain-containing protein -
  DWB25_RS00290 (DWB25_00320) - 69960..70157 (-) 198 WP_012908799.1 DUF957 domain-containing protein -
  DWB25_RS00295 (DWB25_00325) - 70169..70657 (-) 489 WP_061092895.1 DUF5983 family protein -
  DWB25_RS00300 (DWB25_00330) - 70654..71031 (-) 378 WP_061092894.1 TA system toxin CbtA family protein -
  DWB25_RS00305 (DWB25_00335) - 71078..71452 (-) 375 WP_061092893.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DWB25_RS00310 (DWB25_00340) - 71615..71836 (-) 222 WP_061092892.1 DUF987 domain-containing protein -
  DWB25_RS00315 (DWB25_00345) radC 71899..72375 (-) 477 WP_001186188.1 RadC family protein Machinery gene
  DWB25_RS00320 (DWB25_00350) - 72390..72869 (-) 480 WP_000706978.1 antirestriction protein -
  DWB25_RS00325 (DWB25_00355) - 73135..73953 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  DWB25_RS00330 (DWB25_00360) - 74043..74276 (-) 234 WP_001278293.1 DUF905 family protein -
  DWB25_RS00335 (DWB25_00365) - 74282..74959 (-) 678 WP_001097302.1 hypothetical protein -
  DWB25_RS00340 (DWB25_00370) - 75107..75787 (-) 681 WP_001282921.1 WYL domain-containing protein -
  DWB25_RS00345 (DWB25_00375) - 75990..76874 (-) 885 WP_061093096.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.29 Da        Isoelectric Point: 7.2020

>NTDB_id=264002 DWB25_RS00315 WP_001186188.1 71899..72375(-) (radC) [Escherichia coli strain EC17GD31]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=264002 DWB25_RS00315 WP_001186188.1 71899..72375(-) (radC) [Escherichia coli strain EC17GD31]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCATCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399