Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   C1S76_RS23025 Genome accession   NZ_CP025797
Coordinates   1105423..1106724 (-) Length   433 a.a.
NCBI ID   WP_080773121.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100423..1111724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS23010 - 1101685..1102233 (+) 549 WP_005437703.1 GNAT family N-acetyltransferase -
  C1S76_RS23015 - 1102301..1102918 (-) 618 WP_045414758.1 HAD family hydrolase -
  C1S76_RS23020 - 1103222..1105267 (+) 2046 WP_045414760.1 hybrid sensor histidine kinase/response regulator -
  C1S76_RS23025 cqsA 1105423..1106724 (-) 1302 WP_080773121.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1S76_RS23030 ylqF 1107014..1107958 (-) 945 WP_038897169.1 ribosome biogenesis GTPase YlqF -
  C1S76_RS23035 - 1108280..1109266 (-) 987 WP_045414762.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48738.65 Da        Isoelectric Point: 6.4470

>NTDB_id=263909 C1S76_RS23025 WP_080773121.1 1105423..1106724(-) (cqsA) [Vibrio owensii strain 051011B]
MPSLQAHANLCNLANDTSLILVKLYNCQRWRFSVLRRELIMSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRL
EKTLEVIKGADDKRTMLFNRAKELRTGLKQIGFNIRSESQIIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADITSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=263909 C1S76_RS23025 WP_080773121.1 1105423..1106724(-) (cqsA) [Vibrio owensii strain 051011B]
ATGCCGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGGCTAATGACACCTCACTCATATTAGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTATTATGAGTGATAAACTGAAAACGAAACGACTTCCTTCCTTTG
TTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGAACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGA
CCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACTTATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCG
AGATGCTATATCTGAGCATGATGATAATGTCGTTATGTCTGCGATTTTCTTGCAAGATGATGATTCCAAGCCTGCATTTG
AAACGCAGCTTGCGGATTACGTCGGCATGGGGAGTTGCTTGCTTTCCCAGTCGGGATGGGCGGCGAATATAGGATTGTTG
CAGACCATTTGTCCGCCTGAAACGCCGGTTTATATCGACTTCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCCGC
GGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAACCACTTGCGTAAGCAGATCCAGCGTCATGGGTCAGGCGTTA
TCGTGGTAGATTCGGTCTACAGCACGATAGGCACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACACACGGGCCTAACGGCTCCGGCCTGGTAAAAGCGCTGGAACT
CACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAAACCTTTGCGTATCGAGCAGGAGCGATTCTCGGCCCAGAAA
AACTGGCGCGAACGTTACCATTCGTTGCGTTCCCGGCCATTTTTAGTTCAACGGTTCTGCCACAAGAAGTCATTCGACTA
GAGAAAACGCTCGAAGTGATTAAAGGCGCCGATGATAAACGAACTATGTTGTTCAATCGCGCTAAAGAGCTCAGAACGGG
CCTTAAGCAGATTGGTTTTAATATCCGCAGCGAATCACAAATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGC
GAGTACGTGACTTCTTGGAAGAACGTAATGTCTTTGGCGCTGTATTTTGTCGCCCAGCAACGGGAAAGAATAAAAACATT
ATTCGATTCTCAATCAACGCCGACATAACGTCTCGCGACATCGATCATGTGCTGACCGCCTGTCAGGAAGCATATAACCA
TCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(86-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.216

89.607

0.513

Multiple sequence alignment