Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C1S76_RS14180 Genome accession   NZ_CP025796
Coordinates   2949612..2950130 (+) Length   172 a.a.
NCBI ID   WP_005438047.1    Uniprot ID   A0A812FIS6
Organism   Vibrio owensii strain 051011B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944612..2955130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS14170 gshA 2947327..2948895 (+) 1569 WP_045413062.1 glutamate--cysteine ligase -
  C1S76_RS14175 - 2948957..2949520 (+) 564 WP_012128887.1 hypothetical protein -
  C1S76_RS14180 luxS 2949612..2950130 (+) 519 WP_005438047.1 S-ribosylhomocysteine lyase Regulator
  C1S76_RS14185 - 2950217..2951497 (-) 1281 WP_009707575.1 HlyC/CorC family transporter -
  C1S76_RS14190 - 2951652..2952446 (-) 795 WP_005438043.1 inner membrane protein YpjD -
  C1S76_RS14195 ffh 2952660..2954048 (+) 1389 WP_005438041.1 signal recognition particle protein -
  C1S76_RS14200 rpsP 2954259..2954507 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  C1S76_RS14205 rimM 2954538..2955086 (+) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7373

>NTDB_id=263898 C1S76_RS14180 WP_005438047.1 2949612..2950130(+) (luxS) [Vibrio owensii strain 051011B]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263898 C1S76_RS14180 WP_005438047.1 2949612..2950130(+) (luxS) [Vibrio owensii strain 051011B]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGCATGAATGCACCAGCAGTCCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGGGACACCATAACTGTATTCGACCTACGTTTCACTGCGCCAAACAAAGACATCCTTTCTGAGAAAGGGATTC
ATACATTAGAACACTTGTACGCAGGCTTTATGCGTAACCACTTAAATGGTGAGAGTGTTGAGATTATTGATATTTCACCA
ATGGGCTGTCGCACTGGTTTCTACATGAGTTTGATTGGCACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTTTTGAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGCACGGCAGCAATGC
ATTCTCTGGATGAAGCAAAGCAAATCGCGAAGAACATTCTAGAAGCCGGTGTATCAGTCAACAAGAATGACGAGCTTGCG
CTGCCAGAGTCAATGCTAAAAGAACTACGCATTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment