Detailed information NTG0263895

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1S76_RS14020
• Genome accession: NZ_CP025796
• Coordinates: 2921787..2922770 (+)
• Length: 327 a.a.
• NCBI ID: WP_009707587.1
• Uniprot ID: A0A0C1ZGB1
• Organism: Vibrio owensii strain 051011B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2916787..2927770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S76_RS13985	ftsB	2916796..2917077 (+)	282	WP_005436434.1	cell division protein FtsB	-
C1S76_RS13990	ispD	2917079..2917786 (+)	708	WP_045416862.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1S76_RS13995	ispF	2917801..2918277 (+)	477	WP_009707591.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1S76_RS14000	truD	2918323..2919366 (+)	1044	WP_045416860.1	tRNA pseudouridine(13) synthase TruD	-
C1S76_RS14005	surE	2919366..2920142 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
C1S76_RS14010	-	2920142..2920768 (+)	627	WP_005436423.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1S76_RS14015	-	2920783..2921706 (+)	924	WP_045416857.1	peptidoglycan DD-metalloendopeptidase family protein	-
C1S76_RS14020	rpoS	2921787..2922770 (+)	984	WP_009707587.1	RNA polymerase sigma factor RpoS	Regulator
C1S76_RS14025	mutS	2922859..2925420 (-)	2562	WP_045416854.1	DNA mismatch repair protein MutS	-
C1S76_RS14030	pncC	2925506..2925988 (+)	483	WP_045416851.1	nicotinamide-nucleotide amidase	-
C1S76_RS14035	recA	2926189..2927232 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37197.02 Da
• Isoelectric Point: 4.7200

>NTDB_id=263895 C1S76_RS14020 WP_009707587.1 2921787..2922770(+) (rpoS) [Vibrio owensii strain 051011B]
MSISNTVTKVEEFDYDNAQSEGISNEPAKTSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=263895 C1S76_RS14020 WP_009707587.1 2921787..2922770(+) (rpoS) [Vibrio owensii strain 051011B]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGACAATGCACAATCGGAAGGCATTTCAAACGAACC
TGCAAAAACATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGATGCAACACAGC
TCTACTTGGGCGAAATTGGTTTCTCACCACTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGTGGC
GATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCGTGG
CCTCGCACTTCTTGATCTCATCGAGGAAGGCAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAACGCGGTT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTACGCCTCAACGAGCGTATCA
GTTCTGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATCCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCGCGTCGTTTTGGTTTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATCGGACTAACGCGTG
AACGTGTTCGTCAGATCCAAGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAGCAAGGTTTAAACATGGAAAAC
CTGTTTAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A0C1ZGB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859