Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV447_RS12000 Genome accession   NZ_CP031256
Coordinates   2408088..2408564 (-) Length   158 a.a.
NCBI ID   WP_001351157.1    Uniprot ID   -
Organism   Escherichia coli strain M16807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403088..2413564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV447_RS11950 sbmC 2403574..2404047 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  DV447_RS11955 yeeA 2404245..2405303 (+) 1059 WP_001200890.1 FUSC family protein -
  DV447_RS11960 tmaR 2405475..2405804 (+) 330 WP_000450409.1 DUF496 family protein -
  DV447_RS27410 - 2405905..2406087 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DV447_RS11975 - 2406576..2406656 (-) 81 Protein_2201 hypothetical protein -
  DV447_RS11980 yeeW 2406702..2406896 (-) 195 WP_000988601.1 DUF5983 family protein -
  DV447_RS11985 cbtA 2406893..2407267 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DV447_RS11990 cbeA 2407356..2407724 (-) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DV447_RS11995 yeeT 2407798..2408019 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DV447_RS12000 radC 2408088..2408564 (-) 477 WP_001351157.1 RadC family protein Machinery gene
  DV447_RS12005 - 2408580..2409065 (-) 486 WP_000213703.1 antirestriction protein -
  DV447_RS12010 - 2409156..2409977 (-) 822 WP_001234569.1 DUF932 domain-containing protein -
  DV447_RS12020 - 2410198..2410608 (-) 411 WP_000846704.1 hypothetical protein -
  DV447_RS12025 - 2410624..2411301 (-) 678 WP_001362823.1 hypothetical protein -
  DV447_RS12030 - 2411437..2412507 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  DV447_RS12035 - 2412504..2413409 (-) 906 WP_000203550.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17593.25 Da        Isoelectric Point: 6.9180

>NTDB_id=263883 DV447_RS12000 WP_001351157.1 2408088..2408564(-) (radC) [Escherichia coli strain M16807]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=263883 DV447_RS12000 WP_001351157.1 2408088..2408564(-) (radC) [Escherichia coli strain M16807]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399