Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV447_RS08655 Genome accession   NZ_CP031256
Coordinates   1713388..1713903 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain M16807     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708388..1718903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV447_RS08605 csrA 1709105..1709290 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DV447_RS08640 yqaB 1710618..1711184 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DV447_RS08645 yqaA 1711181..1711609 (+) 429 WP_001287462.1 YqaA family protein -
  DV447_RS08650 gshA 1711682..1713238 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DV447_RS08655 luxS 1713388..1713903 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  DV447_RS08660 - 1713952..1715064 (-) 1113 WP_000638135.1 ATP-binding protein -
  DV447_RS08665 - 1715061..1715758 (-) 698 Protein_1589 RNA ligase family protein -
  DV447_RS08670 emrB 1716016..1717554 (-) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  DV447_RS08675 emrA 1717571..1718743 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=263872 DV447_RS08655 WP_001130208.1 1713388..1713903(+) (luxS) [Escherichia coli strain M16807]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=263872 DV447_RS08655 WP_001130208.1 1713388..1713903(+) (luxS) [Escherichia coli strain M16807]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACTTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737