Detailed information NTG0263865

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: C1S76_RS03710
• Genome accession: NZ_CP025796
• Coordinates: 717729..719150 (+)
• Length: 473 a.a.
• NCBI ID: WP_020194844.1
• Uniprot ID: -
• Organism: Vibrio owensii strain 051011B
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 712729..724150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S76_RS03690	-	713138..713749 (-)	612	WP_045412413.1	flavin reductase family protein	-
C1S76_RS03695	-	714426..715095 (+)	670	Protein_640	oxidoreductase	-
C1S76_RS03700	-	715288..716661 (+)	1374	WP_020194842.1	L-cystine transporter	-
C1S76_RS03705	-	716886..717566 (+)	681	WP_045412407.1	DUF1826 domain-containing protein	-
C1S76_RS03710	sbcB	717729..719150 (+)	1422	WP_020194844.1	exodeoxyribonuclease I	Machinery gene
C1S76_RS03715	-	719209..719583 (+)	375	WP_005439820.1	CidA/LrgA family protein	-
C1S76_RS03720	-	719585..720262 (+)	678	WP_009705896.1	LrgB family protein	-
C1S76_RS03725	cdd	720528..721415 (+)	888	WP_005439818.1	cytidine deaminase	-
C1S76_RS03730	-	721465..722163 (-)	699	WP_009705895.1	hypothetical protein	-
C1S76_RS03735	purT	722371..723546 (+)	1176	WP_009705894.1	formate-dependent phosphoribosylglycinamide formyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54559.87 Da
• Isoelectric Point: 4.9293

>NTDB_id=263865 C1S76_RS03710 WP_020194844.1 717729..719150(+) (sbcB) [Vibrio owensii strain 051011B]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMMGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=263865 C1S76_RS03710 WP_020194844.1 717729..719150(+) (sbcB) [Vibrio owensii strain 051011B]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCTGCTG
ATTATCTCCCTTCACCAGAAGCTGCTTTGATCACTGGCATTACGCCACAAAAAGCCATGCAAGAAGGCCTACCTGAGCCA
GAGTTTATCGCTAAGATCCACGCCGAGCTTTCTAAACCAAACACAACGAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACACGTTACACTTGTTACCGCAACTTTATCGACCCATATGCGTGGAGCTGGCAAAACGGTAACTCGCGCTGGG
ATTTGCTCGATGTGATGAGAGCGTGTCATGCCCTTCGTCCTGAGGGTGTGGAATGGCCGGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCCGTCGCCAACGGCATTGAACACAGCAATGCCCACGATGCGATGGCAGATGTAATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGCCGCGCAACCAAAGCTGTTTGATTACTTTTACTCGATGCGTAACAAGCGCA
AGCTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTGTCAGGCATGATGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTGCCAGTGGCTTGGCATCCAACCAACAACAACGCCGTCATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAGCTTTCAGCAGAAGAGTTGAAAGAGCGTTTGTACACCAAGCGTGAAGAACTGGGTGACTTATTGCCTG
TACCCGTAAAGCTCGTACATCTGAACAAGTGCCCTATCCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCAGAGGTA
ATTGGAATCGACCGTCAGAAATGTTTGAGTAATCTAGCGTTGCTGCGTCAACACCCAGAAATCCGTGAGAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCAGCGATGGACATCATTCGTGAAACAGATCCAAATAACCTTGCTGCGCTGGACATTGAGTTTGATGACAAACGC
ATCAAGCCGTTGCTGTTCCGTTACCGTGCCCGTCACTACGCAGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTATATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.281	100	0.793