Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   C1S74_RS24015 Genome accession   NZ_CP025795
Coordinates   1564794..1565891 (-) Length   365 a.a.
NCBI ID   WP_045398420.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559794..1570891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS23995 - 1559866..1560327 (-) 462 WP_042604487.1 Lrp/AsnC family transcriptional regulator -
  C1S74_RS24000 - 1560476..1561402 (+) 927 WP_045398919.1 DMT family transporter -
  C1S74_RS24005 - 1561497..1562159 (+) 663 WP_045398415.1 flagellar brake protein -
  C1S74_RS24010 luxQ 1562218..1564794 (-) 2577 WP_045398417.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  C1S74_RS24015 luxP 1564794..1565891 (-) 1098 WP_045398420.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  C1S74_RS24020 - 1566221..1566547 (-) 327 WP_045398423.1 GIY-YIG nuclease family protein -
  C1S74_RS24025 - 1566544..1567197 (-) 654 WP_045398425.1 YceH family protein -
  C1S74_RS24030 - 1567291..1567494 (-) 204 WP_231565440.1 hypothetical protein -
  C1S74_RS24035 - 1567734..1568048 (+) 315 WP_005373603.1 DUF496 family protein -
  C1S74_RS24040 - 1568172..1569510 (+) 1339 Protein_1342 MATE family efflux transporter -
  C1S74_RS24045 - 1569602..1570594 (-) 993 WP_045398429.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41521.97 Da        Isoelectric Point: 6.4010

>NTDB_id=263863 C1S74_RS24015 WP_045398420.1 1564794..1565891(-) (luxP) [Vibrio hyugaensis strain 090810a]
MKKALLFSLISMIGFSPISNATQVLNGYWAYQEFLDEFPEQRKLTNALAEAVREHPVPFSKTRKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTDTKLILQNI
TTPVRAWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLAKYPDVDFIYACSTDVALGAVDALSELGRDDIMVNGWGGGSAELNAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=263863 C1S74_RS24015 WP_045398420.1 1564794..1565891(-) (luxP) [Vibrio hyugaensis strain 090810a]
ATGAAAAAAGCGTTACTATTTTCTCTGATTTCTATGATCGGTTTTTCACCCATTTCAAATGCTACACAAGTGCTTAATGG
CTATTGGGCGTACCAAGAGTTTCTCGATGAGTTTCCAGAGCAAAGAAAACTGACCAATGCCTTGGCAGAAGCGGTTCGTG
AGCACCCTGTTCCATTCTCAAAAACGAGAAAGCGGCCATTGAAAATTTCGGTTGTGTATCCTGGTCAACAAGTGTCCGAT
TACTGGGTAAGAAACATTGCCGCGTTTGAAAAACGTTTAGATAAGTTGAACATCAACTATCAAATAAACCAAGTATTTAC
TCGTCCAAATGCGGATATCAAGCAACAAAGTTTGTCTTTGATGGAAGCGTTAAAAAGTAAGTCCGATTACTTAATCTTTA
CTTTGGATACCACCAGACACCGCAAGTTTGTTGAGCACGTTTTGGATTCAACAGATACTAAGTTAATTTTACAAAACATC
ACCACGCCTGTTCGTGCTTGGGATAAGCATCAACCATTCTTATATGTCGGTTTTGACCATGCGGAAGGTAGCCGAGAATT
AGCAACGGAATTCGGAAAGTACTTCCCAAAACACACTTATTACAGCGTACTTTATTTCTCTGAGGGCTACATTAGCGACG
TAAGAGGTGATACTTTTATTCACCAAGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACGAAAGCGACA
AAACAATCTGGGTACGATGCTGCGAAAGCGAGCTTAGCAAAATACCCAGATGTTGATTTTATTTACGCCTGCTCAACTGA
TGTGGCTTTAGGCGCTGTCGATGCACTGTCTGAGCTCGGTCGAGATGACATCATGGTCAACGGATGGGGTGGTGGCTCTG
CAGAGCTTAATGCCATTCAAAAAGGTGACCTAGACATTACTGTGATGCGTATGAATGATGATACAGGGATCGCGATGGCA
GAAGCCATTAAATGGGACTTGGAAGGAAAACCAGTTCCTACCGTTTATTCCGGTGATTTTGAAATTGTCACGAAAGCGGA
TTCACCGGAAAGAATCGAAGCACTTAAAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment