Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C1S74_RS13900 Genome accession   NZ_CP025794
Coordinates   2797037..2797555 (+) Length   172 a.a.
NCBI ID   WP_038870464.1    Uniprot ID   A0A2N7N4U2
Organism   Vibrio hyugaensis strain 090810a     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2792037..2802555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS13890 gshA 2794752..2796320 (+) 1569 WP_045403761.1 glutamate--cysteine ligase -
  C1S74_RS13895 - 2796382..2796945 (+) 564 WP_045403763.1 hypothetical protein -
  C1S74_RS13900 luxS 2797037..2797555 (+) 519 WP_038870464.1 S-ribosylhomocysteine lyase Regulator
  C1S74_RS13905 - 2797649..2798923 (-) 1275 WP_038870466.1 CNNM domain-containing protein -
  C1S74_RS13910 - 2799078..2799872 (-) 795 WP_045403765.1 inner membrane protein YpjD -
  C1S74_RS13915 ffh 2800086..2801471 (+) 1386 WP_038870469.1 signal recognition particle protein -
  C1S74_RS13920 rpsP 2801682..2801930 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  C1S74_RS13925 rimM 2801957..2802505 (+) 549 WP_045403766.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19128.88 Da        Isoelectric Point: 4.7373

>NTDB_id=263851 C1S74_RS13900 WP_038870464.1 2797037..2797555(+) (luxS) [Vibrio hyugaensis strain 090810a]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263851 C1S74_RS13900 WP_038870464.1 2797037..2797555(+) (luxS) [Vibrio hyugaensis strain 090810a]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACTCGCATGAATGCACCTGCAGTACGAGTGGCTAAAACGATGCAAAC
CCCTAAAGGGGATACCATCACGGTATTCGACTTGCGCTTTACTGCCCCGAACAAAGACATCCTTTCTGAGCGAGGCATTC
ACACGCTAGAGCACTTGTATGCGGGCTTTATGCGCAATCATCTAAATGGTGAAAGTGTTGAGATTATTGATATTTCACCA
ATGGGCTGTCGTACAGGTTTTTACATGAGTCTAATCGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAACCAAAACAAGATCCCTGAGCTGAACGAGTACCAATGTGGTACAGCTGCAATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCAAAGAACATTCTAGAAGCGGGTGTTGCGGTGAATAAGAATGATGAGCTGGCA
CTACCAGAATCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N4U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment