Detailed information NTG0263848

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1S74_RS13745
• Genome accession: NZ_CP025794
• Coordinates: 2769556..2770539 (+)
• Length: 327 a.a.
• NCBI ID: WP_045397781.1
• Uniprot ID: -
• Organism: Vibrio hyugaensis strain 090810a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2764556..2775539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S74_RS13710	ftsB	2764565..2764846 (+)	282	WP_038870281.1	cell division protein FtsB	-
C1S74_RS13715	ispD	2764848..2765555 (+)	708	WP_045397764.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1S74_RS13720	ispF	2765570..2766046 (+)	477	WP_038870279.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1S74_RS13725	truD	2766093..2767136 (+)	1044	WP_045397766.1	tRNA pseudouridine(13) synthase TruD	-
C1S74_RS13730	surE	2767136..2767912 (+)	777	WP_038870275.1	5'/3'-nucleotidase SurE	-
C1S74_RS13735	-	2767912..2768538 (+)	627	WP_045397767.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1S74_RS13740	-	2768553..2769476 (+)	924	WP_045397769.1	peptidoglycan DD-metalloendopeptidase family protein	-
C1S74_RS13745	rpoS	2769556..2770539 (+)	984	WP_045397781.1	RNA polymerase sigma factor RpoS	Regulator
C1S74_RS13750	mutS	2770629..2773190 (-)	2562	WP_045397770.1	DNA mismatch repair protein MutS	-
C1S74_RS13755	pncC	2773276..2773758 (+)	483	WP_045397772.1	nicotinamide-nucleotide amidase	-
C1S74_RS13760	recA	2773959..2775002 (+)	1044	WP_042602365.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37421.41 Da
• Isoelectric Point: 4.7841

>NTDB_id=263848 C1S74_RS13745 WP_045397781.1 2769556..2770539(+) (rpoS) [Vibrio hyugaensis strain 090810a]
MSISNTVTKVEEFDYDNATTESVNHELEKTPKKAKSTAREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIDWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEVD

Nucleotide

• Length: 984 bp

>NTDB_id=263848 C1S74_RS13745 WP_045397781.1 2769556..2770539(+) (rpoS) [Vibrio hyugaensis strain 090810a]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTATGACAACGCAACGACGGAAAGCGTAAATCACGAACT
TGAAAAAACACCAAAAAAAGCCAAATCGACGGCTCGCGAAGAGTTCGATGCAAGCAATAAAAGCTTAGATGCAACACAGC
TGTATCTAGGTGAAATTGGCTTCTCACCACTACTCACTGCAGAAGAAGAAGTACTTTACGCTCGTCGCGCGCTGCGTGGC
GATGAAGCCGCTCGTAAGCGAATGATTGAAAGTAATTTGCGCCTTGTAGTGAAGATCTCTCGCCGATACAGCAACCGTGG
CCTTGCTCTTCTCGATCTTATTGAAGAAGGCAACCTTGGATTGATTCGTGCGGTAGAGAAGTTCGATCCTGAACGAGGTT
TTCGTTTCTCAACCTACGCGACTTGGTGGATTCGCCAAACGATTGAGCGTGCGTTGATGAATCAAACTCGCACTATTCGT
CTGCCAATTCATGTGGTTAAAGAGCTTAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACGGCAGAAGAAATTGCAGCTCAGCTAGATATTCCAGTTGAAGACGTAAGTAAAATGCTTCGCCTTAACGAACGTATCA
GCTCTGTCGATACTCCTATCGGTGGTGATGGCGAGAAAGCGCTACTGGATATCATTCCTGATGCAAACAATTCGGATCCT
GAAGTATCCACTCAAGACGATGACATCAAATCGTCGTTGATTGACTGGCTAGAAGAGCTAAATCCAAAACAGAAAGAAGT
GCTTGCTCGTCGTTTTGGTTTACTTGGCTACGAGCCATCAACGCTTGAGGAAGTGGGACGCGAGATTGGTCTAACACGCG
AACGTGTACGTCAGATTCAAGTTGAAGGTTTACGTCGATTGCGCGAAATCTTGATTAAGCAAGGTTTGAACATGGAAAAC
CTGTTCAACGTGGAAGTCGACTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859