Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   C1S74_RS09555 Genome accession   NZ_CP025794
Coordinates   1930029..1931036 (+) Length   335 a.a.
NCBI ID   WP_038864897.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925029..1936036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS09530 rplD 1925073..1925675 (-) 603 WP_006878388.1 50S ribosomal protein L4 -
  C1S74_RS09535 rplC 1925693..1926322 (-) 630 WP_005435072.1 50S ribosomal protein L3 -
  C1S74_RS09540 rpsJ 1926337..1926648 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  C1S74_RS09545 rpmE 1927106..1927324 (-) 219 WP_010445294.1 50S ribosomal protein L31 -
  C1S74_RS09550 priA 1927621..1929822 (+) 2202 WP_045399289.1 primosomal protein N' -
  C1S74_RS09555 cytR 1930029..1931036 (+) 1008 WP_038864897.1 DNA-binding transcriptional regulator CytR Regulator
  C1S74_RS09560 - 1931188..1931739 (+) 552 WP_045399292.1 SPOR domain-containing protein -
  C1S74_RS09565 hslV 1932038..1932589 (+) 552 WP_038864894.1 ATP-dependent protease subunit HslV -
  C1S74_RS09570 hslU 1932619..1933950 (+) 1332 WP_038864892.1 HslU--HslV peptidase ATPase subunit -
  C1S74_RS09580 - 1934427..1935344 (+) 918 WP_045399298.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  C1S74_RS09585 rraA 1935420..1935965 (+) 546 WP_045399299.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36897.51 Da        Isoelectric Point: 6.2447

>NTDB_id=263829 C1S74_RS09555 WP_038864897.1 1930029..1931036(+) (cytR) [Vibrio hyugaensis strain 090810a]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKEPQYSVIADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHAGSRLLD
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=263829 C1S74_RS09555 WP_038864897.1 1930029..1931036(+) (cytR) [Vibrio hyugaensis strain 090810a]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCGACAGTATCACGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAGAGAGTGGAAGATGCCGTACTAGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAACT
TACGAAGAAATGAATCAAAAACCATTGTCACTATCGTTCCGGATATTTGCGATCCGTACTTCTCAGAGATCATTCGCGGT
ATCGAAGATGCAGCGATGGAGCATGGCTATCTGGTTCTGCTTGGCGATAGCGGTCAACAAAAGAAACGCGAGAGCTCATT
TGTAAACTTGGTCTTCACCAAACAAGCCGACGGTATGTTGCTGTTGGGTACAGACTTACCCTTTGACGTCAGCAAGCCTG
AGCAAAAGAACCTACCACCTATGGTGATGGCCTGTGAATTTGCCCCTGAGCTGGAGTTACCAACTGTTCATATCGATAAC
CTGACTTCAGCGTTTGAAGCGGTGAACTACCTAACGCAACTTGGTCATAAACGCATCGCGCAAATCTCTGGCCCGGACAC
TGCGGTACTTTGCCAATTCCGTCAGCAAGGTTATCAACAAGCGTTGCGTCGCGCGGGCATCAATAAAGAACCACAATACA
GTGTGATTGCAGATTTCTCCTTTGAAGGTGGAGTACAAGCCGTTCGTAAACTGCTTGAATTACCAGAGCCTCCAACGGCA
CTCTTCTGTCACTGTGACACCATGGCGATTGGAGCCATTCAAGAAGCAAAGCGTCTTGGTCTTCGTATTCCTCAAGATTT
GTCTATTGTCGGCTTTGATGACATTCAGTTCGCGCAATACTGCGATCCACCACTGACCACCATTTCTCAACCTCGTTACG
AGATTGGTCGCCAAGCTATGCTGATGATGCTAGAGCTACTTAAAGGCCATGATGTACATGCTGGATCTCGACTGCTCGAT
ACTAAGCTTGTCGTTCGTGGTAGTGCTGCGCCTCCACCATTACGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.084

99.104

0.952
  cytR Vibrio cholerae C6706

90.663

99.104

0.899

Multiple sequence alignment