Detailed information NTG0263819

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: C1S74_RS03620
• Genome accession: NZ_CP025794
• Coordinates: 629283..630704 (+)
• Length: 473 a.a.
• NCBI ID: WP_045401557.1
• Uniprot ID: -
• Organism: Vibrio hyugaensis strain 090810a
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 624283..635704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S74_RS03600	-	624636..625247 (-)	612	WP_045401545.1	flavin reductase family protein	-
C1S74_RS03605	-	625912..626607 (+)	696	WP_045401548.1	NAD(P)H-binding protein	-
C1S74_RS03610	-	626799..628172 (+)	1374	WP_045401551.1	L-cystine transporter	-
C1S74_RS03615	-	628402..629082 (+)	681	WP_045401554.1	DUF1826 domain-containing protein	-
C1S74_RS03620	sbcB	629283..630704 (+)	1422	WP_045401557.1	exodeoxyribonuclease I	Machinery gene
C1S74_RS03625	-	630763..631137 (+)	375	WP_045401560.1	CidA/LrgA family protein	-
C1S74_RS03630	-	631139..631816 (+)	678	WP_045401562.1	LrgB family protein	-
C1S74_RS03635	cdd	632085..632972 (+)	888	WP_045401564.1	cytidine deaminase	-
C1S74_RS03640	purT	633120..634295 (+)	1176	WP_045401565.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
C1S74_RS03645	-	634376..635026 (-)	651	WP_045401568.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54467.85 Da
• Isoelectric Point: 5.0334

>NTDB_id=263819 C1S74_RS03620 WP_045401557.1 629283..630704(+) (sbcB) [Vibrio hyugaensis strain 090810a]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILDLSAEELKVRLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTADNAEL
IGIDRQKCLSNLALLRQHPEIRDKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHFTGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=263819 C1S74_RS03620 WP_045401557.1 629283..630704(+) (sbcB) [Vibrio hyugaensis strain 090810a]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAGTCCAGCCAAAGATCGTCCGAG
CCAATTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAACCATTAGTCATGTATTGCCGACCACCTGCTG
ATTACCTCCCTTCTCCCGAAGCAGCTTTGATTACCGGTATCACGCCGCAAAAAGCAATGCAAGAAGGCTTACCCGAGCCA
GAATTTATTGCAAAAATTCACGCAGAGCTTTCGAAGCCAAAGACCACTAGCCTTGGATATAACAGTATTCGTTTCGATGA
TGAAGTGACACGCTACACCTGTTACCGTAACTTTATCGACCCTTACGCATGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATTTATTGGACGTAATGCGCGCATGTCATGCGCTTCGGCCAGAAGGCGTGGAATGGCCAGAAAATGATGAAGGCTTTACC
AGCTTTAAATTGGAGCACTTGTCGGTAGCCAACGGTATCGAGCACAGTAACGCCCATGATGCGATGGCAGACGTCATCGC
GACCATCGAAATGGCGAAGAAAGTCAAAGCGGCACAACCGAAGCTGTTTGATTACTTTTTCTCTATGCGTAACAAACGCA
AACTGAACGACCTTGTTGATATCGTCAACATGACACCGTTAATGCACGTTTCTGGCATGTTAGGGCGTGAATGCCAGTAT
ACAAGCTGGATCGTACCTGTCGCTTGGCATCCAACAAACAACAACGCCGTTATCACGATCGACTTGGCAAAAGATCCTCA
GCCGATCCTCGACCTTTCGGCAGAAGAGCTAAAAGTACGTTTGTACACCAAACGCGATGAATTAGGAGACTTGCTTCCTG
TGCCTGTCAAACTGGTGCATTTGAATAAGTGCCCTATTCTTGCTCCCGCAAAGACTTTGACAGCCGACAACGCAGAGTTG
ATTGGTATTGATCGCCAAAAATGCTTAAGCAATCTTGCTTTACTTCGTCAGCATCCAGAGATCCGAGACAAACTTATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGATGACGTCGATACGCAGCTGTACGATGGATTTTTCTCCCCAGCCG
ATCGAGCAGCAATGGATATCATCCGAGAAACGGATCCAAACAACCTCGCAGCTCTTGATATCGAATTCGACGATAAACGA
ATTAAACCACTGTTGTTCCGTTACCGTGCGCGTCATTTTACGGGCACGTTGGATGAGCAAGAGCAAAGGCGCTGGGCGCA
ACATTGTCGTGAAGTCTTCGAAAGCCAAATCGAAGAGTACATGTTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCACTATTAAAATCTGTCTATCGTTACGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.013	100	0.78