Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   C1S73_RS25370 Genome accession   NZ_CP025793
Coordinates   1767987..1769084 (-) Length   365 a.a.
NCBI ID   WP_038867368.1    Uniprot ID   A0A2N7N0H9
Organism   Vibrio jasicida 090810c     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762987..1774084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS25350 - 1763058..1763519 (-) 462 WP_038867482.1 Lrp/AsnC family transcriptional regulator -
  C1S73_RS25355 - 1763668..1764595 (+) 928 Protein_1539 DMT family transporter -
  C1S73_RS25360 - 1764690..1765352 (+) 663 WP_038867372.1 flagellar brake protein -
  C1S73_RS25365 luxQ 1765411..1767987 (-) 2577 WP_038867370.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  C1S73_RS25370 luxP 1767987..1769084 (-) 1098 WP_038867368.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  C1S73_RS25375 - 1769462..1769773 (-) 312 WP_038867367.1 GIY-YIG nuclease family protein -
  C1S73_RS25380 - 1769770..1770423 (-) 654 WP_038867365.1 YceH family protein -
  C1S73_RS25385 - 1770517..1770732 (-) 216 WP_042604483.1 hypothetical protein -
  C1S73_RS25390 - 1770961..1771275 (+) 315 WP_005373603.1 DUF496 family protein -
  C1S73_RS25395 - 1771399..1772736 (+) 1338 WP_038867363.1 MATE family efflux transporter -
  C1S73_RS25400 - 1772828..1773820 (-) 993 WP_038867360.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41561.01 Da        Isoelectric Point: 6.1806

>NTDB_id=263817 C1S73_RS25370 WP_038867368.1 1767987..1769084(-) (luxP) [Vibrio jasicida 090810c]
MKKAVLLSLISMIGFSPISHATQVLNGYWAYQDFLDEFPEQRKLTNALAEAVRERPVPFSKTRTRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLAKYPDVDFIYACSTDVALGAVDALSELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=263817 C1S73_RS25370 WP_038867368.1 1767987..1769084(-) (luxP) [Vibrio jasicida 090810c]
ATGAAAAAAGCGGTACTACTTTCTCTGATTTCTATGATCGGTTTTTCACCGATTTCACATGCGACACAAGTGCTTAATGG
CTATTGGGCATACCAAGATTTTCTTGATGAGTTTCCTGAGCAAAGAAAGCTGACCAATGCCTTAGCAGAAGCCGTTCGCG
AACGTCCTGTGCCATTCTCTAAAACCAGAACACGTCCACTTAAAATATCCGTCGTATATCCGGGTCAACAAGTGTCAGAT
TACTGGGTACGAAACATTGCTGCTTTTGAAAAGCGTTTAGATAAGTTGAATATTAACTATCAAATTAACCAAGTGTTTAC
GCGTCCGAATGCCGATATAAAGCAACAGAGTTTGTCTTTAATGGAAGCATTAAAAAGTAAATCTGATTACTTAATCTTCA
CTCTGGATACCACCAGACATCGTAAATTTGTTGAACATGTATTGGATTCAACAAATACCAAGCTGATTTTACAAAATATC
ACTACGCCAGTACGAGAGTGGGACAAACATCAGCCGTTTTTATATGTTGGGTTTGACCATGCAGAAGGCAGTCGAGAATT
AGCAACGGAATTCGGAAAGTACTTCCCAAAACACACTTATTACAGCGTGCTTTATTTTTCTGAGGGTTACATTAGTGACG
TAAGAGGTGATACTTTTATTCACCAAGTTAACCGTGATAATAACTTTGAGCTACAATCAGCCTACTATACAAAAGCAACA
AAGCAGTCTGGTTATGATGCTGCGAAAGCGAGTTTAGCCAAATACCCAGATGTTGATTTTATTTATGCTTGCTCTACTGA
TGTGGCGTTGGGTGCGGTTGATGCACTTTCTGAATTGGGAAGAGAAGACATTATGATTAACGGATGGGGTGGGGGCTCTG
CCGAGTTAGACGCCATCCAAAAAGGCGATCTCGACATTACTGTCATGCGTATGAATGACGACACCGGGATTGCGATGGCA
GAAGCCATTAAGTGGGACTTGGAAGGAAAGCCAGTACCTACCGTGTATTCCGGTGATTTTGAAATTGTCACGAAAGCGGA
TTCACCGGAAAGAATCGAAGCGCTTAAGAAGCGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N0H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.462

99.726

0.633

Multiple sequence alignment