Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C1S73_RS13710 Genome accession   NZ_CP025792
Coordinates   2849335..2849853 (+) Length   172 a.a.
NCBI ID   WP_038870464.1    Uniprot ID   A0A2N7N4U2
Organism   Vibrio jasicida 090810c     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844335..2854853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS13700 gshA 2847051..2848619 (+) 1569 WP_038870460.1 glutamate--cysteine ligase -
  C1S73_RS13705 - 2848681..2849244 (+) 564 WP_038870462.1 hypothetical protein -
  C1S73_RS13710 luxS 2849335..2849853 (+) 519 WP_038870464.1 S-ribosylhomocysteine lyase Regulator
  C1S73_RS13715 - 2849947..2851221 (-) 1275 WP_038870466.1 CNNM domain-containing protein -
  C1S73_RS13720 - 2851376..2852170 (-) 795 WP_038870467.1 inner membrane protein YpjD -
  C1S73_RS13725 ffh 2852384..2853769 (+) 1386 WP_038870469.1 signal recognition particle protein -
  C1S73_RS13730 rpsP 2853980..2854228 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  C1S73_RS13735 rimM 2854255..2854803 (+) 549 WP_038870471.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19128.88 Da        Isoelectric Point: 4.7373

>NTDB_id=263801 C1S73_RS13710 WP_038870464.1 2849335..2849853(+) (luxS) [Vibrio jasicida 090810c]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263801 C1S73_RS13710 WP_038870464.1 2849335..2849853(+) (luxS) [Vibrio jasicida 090810c]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACTCGCATGAATGCACCTGCAGTACGAGTGGCTAAAACGATGCAAAC
CCCTAAAGGGGATACCATCACGGTATTCGACTTGCGCTTTACTGCCCCGAACAAAGACATCCTTTCTGAGCGAGGAATTC
ACACGCTAGAGCACTTGTATGCAGGCTTTATGCGCAATCATCTAAATGGTGAAAGTGTTGAGATTATTGATATTTCACCA
ATGGGCTGTCGTACAGGTTTTTACATGAGTCTAATCGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAACCAAAACAAGATCCCTGAGCTGAACGAGTACCAATGTGGTACAGCGGCAATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCAAAGAACATTCTAGAAGCGGGGGTTGCGGTGAATAAGAATGATGAGCTGGCA
CTACCAGAATCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N4U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment