Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   C1S73_RS09265 Genome accession   NZ_CP025792
Coordinates   1964381..1965388 (+) Length   335 a.a.
NCBI ID   WP_038864897.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959381..1970388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS09240 rplD 1959425..1960027 (-) 603 WP_006878388.1 50S ribosomal protein L4 -
  C1S73_RS09245 rplC 1960045..1960674 (-) 630 WP_005435072.1 50S ribosomal protein L3 -
  C1S73_RS09250 rpsJ 1960689..1961000 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  C1S73_RS09255 rpmE 1961458..1961676 (-) 219 WP_010445294.1 50S ribosomal protein L31 -
  C1S73_RS09260 priA 1961973..1964174 (+) 2202 WP_038864898.1 primosomal protein N' -
  C1S73_RS09265 cytR 1964381..1965388 (+) 1008 WP_038864897.1 DNA-binding transcriptional regulator CytR Regulator
  C1S73_RS09270 - 1965540..1966092 (+) 553 Protein_1733 SPOR domain-containing protein -
  C1S73_RS09275 hslV 1966208..1966759 (+) 552 WP_038864894.1 ATP-dependent protease subunit HslV -
  C1S73_RS09280 hslU 1966789..1968120 (+) 1332 WP_038864892.1 HslU--HslV peptidase ATPase subunit -
  C1S73_RS09285 - 1968599..1969516 (+) 918 WP_038864890.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  C1S73_RS09290 rraA 1969592..1970125 (+) 534 WP_038864888.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36897.51 Da        Isoelectric Point: 6.2447

>NTDB_id=263780 C1S73_RS09265 WP_038864897.1 1964381..1965388(+) (cytR) [Vibrio jasicida 090810c]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKEPQYSVIADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHAGSRLLD
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=263780 C1S73_RS09265 WP_038864897.1 1964381..1965388(+) (cytR) [Vibrio jasicida 090810c]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCGACAGTATCACGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAGAGAGTGGAAGATGCCGTACTAGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAACT
TACGAAGAAATGAATCAAAAACCATTGTCACTATCGTTCCGGATATTTGCGATCCGTACTTCTCAGAGATCATTCGCGGT
ATCGAAGATGCAGCGATGGAACATGGCTATCTGGTTCTGCTTGGCGATAGCGGTCAACAAAAGAAACGTGAGAGCTCATT
TGTAAACTTGGTCTTCACCAAACAAGCCGACGGTATGTTGCTGTTGGGTACAGACTTACCCTTTGACGTCAGCAAGCCTG
AGCAAAAGAACCTACCACCTATGGTGATGGCCTGTGAGTTTGCCCCTGAGTTGGAGTTACCAACCGTTCATATCGATAAC
CTGACTTCAGCGTTTGAAGCGGTGAACTACCTAACGCAACTTGGTCATAAACGCATCGCGCAAATCTCTGGCCCGGACAC
TGCAGTACTTTGCCAATTCCGTCAGCAAGGTTATCAACAAGCGTTGCGTCGCGCAGGCATCAATAAAGAACCACAATACA
GTGTGATTGCAGATTTCTCCTTTGAAGGTGGCGTACAAGCCGTTCGTAAACTGCTTGAATTGCCAGAGCCTCCAACGGCA
CTCTTCTGTCACTGTGACACCATGGCGATTGGAGCTATTCAAGAAGCAAAGCGTCTTGGTCTGCGTATCCCACAGGATTT
GTCTATTGTCGGCTTTGATGACATTCAGTTCGCGCAATACTGCGATCCACCACTGACCACCATTTCTCAACCTCGTTACG
AGATTGGTCGCCAAGCGATGCTGATGATGCTAGAGCTACTTAAAGGCCATGATGTACATGCTGGCTCTCGACTGCTCGAC
ACTAAGCTTGTCGTGCGAGGTAGTGCTGCGCCTCCACCATTACGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.084

99.104

0.952
  cytR Vibrio cholerae C6706

90.663

99.104

0.899

Multiple sequence alignment