Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DV445_RS02510 Genome accession   NZ_CP031255
Coordinates   502515..504683 (+) Length   722 a.a.
NCBI ID   WP_114921579.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497515..509683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS02490 - 497748..500615 (+) 2868 WP_114921576.1 Rne/Rng family ribonuclease -
  DV445_RS02495 - 500916..501551 (+) 636 WP_040665525.1 hypothetical protein -
  DV445_RS02500 - 501694..501900 (-) 207 WP_114921577.1 hypothetical protein -
  DV445_RS13630 - 502363..502473 (-) 111 Protein_480 IS5/IS1182 family transposase -
  DV445_RS02510 priA 502515..504683 (+) 2169 WP_114921579.1 primosomal protein N' Machinery gene
  DV445_RS02515 - 504749..505240 (-) 492 WP_049249038.1 TlpA family protein disulfide reductase -
  DV445_RS02520 - 505237..505635 (-) 399 WP_114921580.1 acyl-CoA thioesterase -
  DV445_RS02525 - 505638..505997 (-) 360 WP_003769391.1 hypothetical protein -
  DV445_RS02530 - 506077..506562 (-) 486 WP_114921581.1 CYTH domain-containing protein -
  DV445_RS02535 - 506577..506999 (-) 423 WP_114921582.1 CopD family protein -
  DV445_RS02540 - 507111..507383 (+) 273 WP_074894888.1 hypothetical protein -
  DV445_RS02545 - 507572..507913 (+) 342 WP_074894890.1 CidA/LrgA family protein -
  DV445_RS02550 - 507915..508607 (+) 693 WP_114921583.1 LrgB family protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 80486.06 Da        Isoelectric Point: 7.1035

>NTDB_id=263780 DV445_RS02510 WP_114921579.1 502515..504683(+) (priA) [Neisseria elongata strain M15910]
MIYHRIAVNVPLSDGLLTYSHSEPLPQGTRVLVPFRNKTVVGIVWETDIAPDMDAVRILSIQTTFSDEPPLPENWRDLLS
FTSRYYHYPTGQVVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPAQFNKKAALWDALLSGGMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRSSEFQLNANQQQASDEIQTAFGSFQPFLLYGITGSGKTEVYFDAMAKVLAQGRQVL
FLLPEINLTPQLLKRVENRFADVPTAVLHSQMAAGRRTQDYLRAMLRQAKLVIGTRLAVFTPLPDVGLIVVDEEHDGSFK
QDNELRYHARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLDNGFSPQA
LQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCGNQDLTAV
GHGTQRVEETLRAFLPKAVVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFVRLNLVIVLNADGSLYSAD
FRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVRADAPRVA
DAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESPSRQDLHRAVSLWVQVLQQNRDGKIRWSVDVDTQ
ES

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=263780 DV445_RS02510 WP_114921579.1 502515..504683(+) (priA) [Neisseria elongata strain M15910]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGAGCCGCTGCCGCA
GGGAACGCGGGTGCTTGTGCCTTTCCGCAACAAGACCGTGGTCGGGATTGTGTGGGAAACGGATATTGCGCCGGATATGG
ATGCGGTGCGGATTTTGAGTATTCAGACGACCTTTTCGGACGAACCGCCGCTGCCTGAAAACTGGCGTGATTTGCTCTCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGTGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTACGCGCTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCAGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGGGATGACGATGGCGGCGTTGAAGCAGGTGAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTCTGA
ATTTCAGCTCAACGCCAACCAGCAACAGGCTTCCGATGAAATTCAGACGGCCTTCGGCAGCTTTCAACCGTTTCTGCTGT
ACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTTGATGCGATGGCGAAAGTGTTGGCGCAGGGGCGGCAGGTGTTG
TTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTTCGCCGACGTACCGACCGCCGT
GTTGCACAGCCAGATGGCGGCAGGCAGGCGCACGCAGGATTATTTGCGCGCGATGTTGAGGCAGGCGAAATTGGTCATCG
GCACGCGGCTGGCGGTGTTCACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAGGAACACGACGGCTCGTTCAAA
CAGGACAACGAATTGCGCTACCACGCTCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAGCGGCTGCCCCGTCGTGTTGGG
CAGCGCCACGCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGCTGCAATTGACCGAACGCGCCC
ATACCGCCGCGCAACTGCCGCAAGTGGACATCCTCAACGTAGGCCGTCTGAAACTCGACAACGGCTTCTCACCGCAAGCC
TTGCAGCTTTTGAAACAGAACTTCGAAGCGGGCGGCATGTCGCTGGTGTACCTCAACCGGCGCGGCTTCGCGCCCGCGCT
GTTTTGCGGCGACTGTGGCCATACCTTCGGCTGTCCGAACTGCTCCGCCAAAATGGTGCTGCACCAACGCGCCCGCCAAC
TGCGCTGCCACCACTGCGACCACCGCGAACCCATTCCGTTCAAATGCCCCGACTGCGGCAACCAAGACCTGACCGCCGTC
GGCCACGGCACGCAGCGCGTCGAAGAAACCTTGCGCGCCTTCCTGCCCAAGGCAGTCGTCGTCCGTGTCGACAGGGACAG
CACGGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACGAAATCGACATTCTGGTCGGCACGCAGA
TGCTCGCCAAAGGTCATGATTTCGTACGGCTCAACCTCGTTATCGTGTTGAACGCCGACGGCAGCCTGTACAGCGCGGAC
TTTCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGACGCGCCGACAAACCCGGCAAGGT
GCTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGACTACGCCGTGTTTGCCGAAAACG
AATTGAACGAACGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTTCGCGCCGACGCGCCGCGCGTTGCC
GATGCGATGGAGTTTCTCAACGCCGCCAAAGAAACCCTCGCACCGCTTTTGCCCGAAAGCGTCTCCCAGTTCGGCGCCGC
CCCCATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATTTTCCTCGAATCCCCGTCCCGACAGGATTTGCACC
GCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCAGATGGTCGGTGGATGTGGATACACAA
GAATCGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(510-581)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(438-464)

DEAD/DEAH box helicase (DEAD)

(209-354)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Primosomal protein N C-terminal domain (PriA_C)

(625-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.892

100

0.378

Multiple sequence alignment