Detailed information NTG0263770

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: C1S73_RS03280
• Genome accession: NZ_CP025792
• Coordinates: 678681..680102 (+)
• Length: 473 a.a.
• NCBI ID: WP_038868626.1
• Uniprot ID: A0A2N7N025
• Organism: Vibrio jasicida 090810c
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 673681..685102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S73_RS03260	-	674015..674626 (-)	612	WP_038868622.1	flavin reductase family protein	-
C1S73_RS03265	-	675300..675995 (+)	696	WP_038868623.1	NAD(P)H-binding protein	-
C1S73_RS03270	-	676185..677558 (+)	1374	WP_038868624.1	L-cystine transporter	-
C1S73_RS03275	-	677788..678468 (+)	681	WP_038868625.1	DUF1826 domain-containing protein	-
C1S73_RS03280	sbcB	678681..680102 (+)	1422	WP_038868626.1	exodeoxyribonuclease I	Machinery gene
C1S73_RS03285	-	680161..680535 (+)	375	WP_038868628.1	CidA/LrgA family protein	-
C1S73_RS03290	-	680537..681214 (+)	678	WP_038868629.1	LrgB family protein	-
C1S73_RS03295	cdd	681483..682370 (+)	888	WP_038868630.1	cytidine deaminase	-
C1S73_RS03300	purT	682518..683693 (+)	1176	WP_038868631.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
C1S73_RS03305	-	683773..684423 (-)	651	WP_038868632.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54497.83 Da
• Isoelectric Point: 4.9782

>NTDB_id=263770 C1S73_RS03280 WP_038868626.1 678681..680102(+) (sbcB) [Vibrio jasicida 090810c]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILDLSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEL
IGIDRQKCLSNLALLRQHPEIRDKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=263770 C1S73_RS03280 WP_038868626.1 678681..680102(+) (sbcB) [Vibrio jasicida 090810c]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAGTCCAGCCAAAGATCGTCCGAG
CCAATTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAACCATTAGTCATGTATTGCCGACCACCTGCTG
ATTACCTCCCTTCTCCCGAAGCAGCTTTGATTACCGGTATCACGCCGCAAAAAGCAATGCAAGAAGGCTTACCTGAGCCT
GAGTTTATCGCTAAGATCCATGCAGAGCTTTCGAAGCCAAAGACAACTAGCCTTGGATATAACAGTATTCGTTTCGATGA
TGAAGTGACACGTTACACCTGTTACCGTAACTTTATCGACCCTTACGCATGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATTTGTTGGACGTAATGCGCGCATGTCATGCGCTTCGGCCAGAAGGCGTGGAATGGCCAGAAAATGATGAAGGCTTTACC
AGCTTTAAATTGGAACACTTGTCGGTAGCCAACGGTATCGAGCACAGTAACGCCCATGATGCGATGGCCGACGTCATTGC
GACCATCGAAATGGCGAAGAAAGTCAAAGCGGCACAACCGAAGCTGTTTGATTACTTTTTCTCTATGCGTAACAAACGCA
AACTGAACGACCTTGTTGATATCGTCAACATGACACCGTTAATGCACGTTTCTGGCATGTTAGGGCGTGAATGCCAGTAT
ACAAGCTGGATCGTACCTGTCGCTTGGCATCCAACAAACAACAACGCCGTTATCACGATTGACTTGGCAAAAGATCCTCA
GCCGATCCTCGACCTTTCGGCAGAAGAGCTAAAAGAACGCTTGTACACCAAACGCGATGAATTAGGAGACTTGCTTCCTG
TTCCTGTCAAACTGGTGCATTTGAATAAGTGCCCTATTCTTGCTCCCGCAAAGACTTTGACAGCCGAAAACGCAGAGTTG
ATTGGTATTGATCGCCAAAAATGCTTAAGCAATCTTGCTTTACTTCGTCAGCATCCAGAGATCCGAGACAAACTTATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGATGACGTTGATACGCAGCTGTACGATGGATTTTTCTCCCCAGCCG
ATCGAGCAGCAATGGATATCATCCGAGAAACGGATCCAAACAACCTCGCAGCTCTTGATATCGAATTCGACGATAAACGA
ATTAAACCACTGTTGTTCCGTTACCGTGCCCGTCACTACGCTGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCACTATTAAAATCTGTCTATCGTTACGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

3D structure

• AlphaFold DB: A0A2N7N025

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.436	100	0.784