Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C1H71_RS14805 Genome accession   NZ_CP025781
Coordinates   3340623..3341975 (+) Length   450 a.a.
NCBI ID   WP_130108246.1    Uniprot ID   A0A7G3GEX8
Organism   Iodobacter fluviatilis strain PCH194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3335623..3346975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H71_RS14790 (C1H71_14995) flgJ 3335667..3336521 (+) 855 WP_130107233.1 flagellar assembly peptidoglycan hydrolase FlgJ -
  C1H71_RS14795 (C1H71_15000) flgK 3336623..3338866 (+) 2244 WP_130107234.1 flagellar hook-associated protein FlgK -
  C1H71_RS14800 (C1H71_15005) flgL 3338913..3340373 (+) 1461 WP_130107235.1 flagellar hook-associated protein FlgL -
  C1H71_RS14805 (C1H71_15010) radA 3340623..3341975 (+) 1353 WP_130108246.1 DNA repair protein RadA Machinery gene
  C1H71_RS14810 (C1H71_15015) trxA 3342101..3342427 (+) 327 WP_130107236.1 thioredoxin TrxA -
  C1H71_RS14815 (C1H71_15020) rho 3342550..3343806 (+) 1257 WP_130107237.1 transcription termination factor Rho -
  C1H71_RS14820 (C1H71_15025) - 3343906..3344163 (+) 258 WP_130107238.1 type B 50S ribosomal protein L31 -
  C1H71_RS14825 (C1H71_15030) - 3344281..3345909 (+) 1629 WP_130107239.1 glycosyltransferase family 39 protein -
  C1H71_RS14830 (C1H71_15035) - 3345975..3346151 (-) 177 WP_130107240.1 DUF3149 domain-containing protein -
  C1H71_RS21545 - 3346420..3346647 (-) 228 Protein_2934 IS481 family transposase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47564.06 Da        Isoelectric Point: 7.4344

>NTDB_id=263752 C1H71_RS14805 WP_130108246.1 3340623..3341975(+) (radA) [Iodobacter fluviatilis strain PCH194]
MAKIRSTFICQLCGTASPKWQGQCPGCGEWNTLQEGVAEAASSTRFQSLAADGAIHQLSDVEAAEIPRIPTGMAELDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQAMTLLAAARAVLYVSGEESPQQIALRAKRLGLPAGKVALYAEIGLEKILAALEK
VGPQVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRYAKRTGTTIFLVGHVTKDGAIAGPRVLEHIVDAVLYFEGDTH
SSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSALFLSQHKEPVPGSCVLVTQEGTRPLLVEIQALVDDAHSPQPKR
LAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIAEPAADLAVLLAIVSSLKNRPLPEKLVVFGEVGLAGEVRP
VQRGQERLREAAKLGFTHAIIPKGNRPRQAIEGMTVTLVDRLDEAVSAAM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=263752 C1H71_RS14805 WP_130108246.1 3340623..3341975(+) (radA) [Iodobacter fluviatilis strain PCH194]
ATGGCTAAAATTCGATCTACTTTTATTTGTCAGCTTTGCGGCACAGCATCGCCCAAATGGCAGGGGCAATGTCCAGGTTG
TGGCGAGTGGAATACGCTGCAAGAAGGTGTGGCAGAGGCCGCATCCAGTACGCGTTTTCAATCTTTGGCTGCTGATGGGG
CAATCCACCAGCTAAGCGATGTAGAAGCGGCAGAAATCCCCCGCATCCCTACCGGTATGGCGGAGCTTGATCGTGTGCTA
GGCGGTGGCTTAGTGCCGGGTGGCGTGGTGTTGATTGGTGGCGATCCAGGGATCGGCAAATCAACGCTACTCTTGCAGGC
GATGACGCTGCTGGCGGCGGCAAGAGCGGTTTTGTATGTATCGGGGGAAGAATCGCCACAGCAGATTGCTTTGCGGGCTA
AACGCCTAGGTTTGCCCGCTGGCAAAGTGGCTTTGTATGCCGAAATTGGCTTAGAAAAAATTTTAGCTGCCCTAGAAAAA
GTTGGCCCCCAAGTGGCTGTAATTGATTCGATCCAAACCGTTTATTCTGAGGCTTTAACCTCTGCGCCAGGTAGCGTAGC
CCAAGTTAGAGAATGCGCAGCCCAGCTTACGCGTTACGCAAAGCGTACCGGCACAACTATTTTCTTGGTTGGCCACGTCA
CCAAAGATGGTGCCATTGCTGGCCCGCGCGTGCTTGAGCATATTGTTGATGCGGTATTGTATTTTGAGGGCGATACGCAT
TCTAGTTTTAGACTAATCCGAGCCATTAAAAACCGCTTTGGAGCGGTCAATGAGCTAGGCGTGTTTGCTATGACGGATAA
AGGCTTGCGTGAAGTTTCAAATCCTTCGGCGCTGTTTTTATCCCAGCATAAAGAGCCGGTGCCAGGTAGTTGTGTGCTGG
TAACGCAAGAGGGCACACGGCCGTTACTGGTGGAGATTCAAGCCTTGGTGGATGATGCACACTCACCTCAGCCTAAGCGC
TTGGCTGTTGGGGTGGAGCAAAATCGCTTGGCTTTACTGCTTGCTGTGTTGCATCGCCATGCGGGGATTGCTGCATTTGA
TCAAGATGTGTTTATTAATGCTGTAGGCGGGGTGCGTATCGCTGAGCCTGCGGCAGATTTGGCTGTTTTATTGGCGATTG
TTTCCTCGCTAAAAAATCGGCCATTGCCAGAAAAATTAGTGGTGTTTGGTGAGGTGGGGTTGGCTGGTGAAGTGAGGCCC
GTGCAACGTGGACAAGAGCGCCTGCGCGAGGCTGCTAAATTGGGTTTTACCCATGCCATTATTCCTAAAGGTAATCGTCC
GCGCCAAGCCATTGAAGGCATGACCGTGACCTTGGTTGATCGTTTGGATGAGGCCGTTAGCGCGGCAATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-449)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G3GEX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.344

100

0.487
  radA Streptococcus mitis NCTC 12261

48.124

100

0.484
  radA Bacillus subtilis subsp. subtilis str. 168

50.465

95.556

0.482
  radA Streptococcus pneumoniae TIGR4

49.765

94.667

0.471
  radA Streptococcus pneumoniae D39

49.765

94.667

0.471
  radA Streptococcus pneumoniae Rx1

49.765

94.667

0.471
  radA Streptococcus pneumoniae R6

49.765

94.667

0.471

Multiple sequence alignment