Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C1H71_RS07255 | Genome accession | NZ_CP025781 |
| Coordinates | 1623107..1624339 (+) | Length | 410 a.a. |
| NCBI ID | WP_188053644.1 | Uniprot ID | - |
| Organism | Iodobacter fluviatilis strain PCH194 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1618107..1629339
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1H71_RS07240 (C1H71_07315) | - | 1619159..1620151 (+) | 993 | WP_130105948.1 | HDOD domain-containing protein | - |
| C1H71_RS07245 (C1H71_07320) | - | 1620148..1622187 (+) | 2040 | WP_130105949.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| C1H71_RS07250 (C1H71_07325) | rsmD | 1622411..1622965 (-) | 555 | WP_130105950.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| C1H71_RS07255 (C1H71_07330) | pilA | 1623107..1624339 (+) | 1233 | WP_188053644.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| C1H71_RS07260 (C1H71_07335) | - | 1624377..1624904 (+) | 528 | WP_130105951.1 | GNAT family N-acetyltransferase | - |
| C1H71_RS07265 (C1H71_07340) | ftsE | 1624942..1625595 (+) | 654 | WP_130105952.1 | cell division ATP-binding protein FtsE | - |
| C1H71_RS07270 (C1H71_07345) | ftsX | 1625602..1626504 (+) | 903 | WP_130105953.1 | permease-like cell division protein FtsX | - |
| C1H71_RS07275 (C1H71_07350) | rpoH | 1626691..1627542 (+) | 852 | WP_130105954.1 | RNA polymerase sigma factor RpoH | - |
| C1H71_RS07280 (C1H71_07355) | msrP | 1627754..1628677 (-) | 924 | WP_130105955.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 43020.35 Da Isoelectric Point: 4.9306
>NTDB_id=263741 C1H71_RS07255 WP_188053644.1 1623107..1624339(+) (pilA) [Iodobacter fluviatilis strain PCH194]
MFSFFRKKKPVAPVTPESPLVVEPVQIDTAPINQTAEVVTDSAPAPSAALIQQHEAIAIETVIAEPAAAPFQSVEPDAPA
PAPAPAPAPAPAPAPAPAPIIEAAEPQAKLSWSERLKAGLTKTRDRLGKSLAGLFGGGQIDEDLYEELESVLLTADMGVD
ATQHLLDDVRNRVSLAGLKNGSELKGALQSSLTDLINPLQKPLDISTHKPFILMVAGVNGAGKTTSIGKLAKYFQGQGLS
VLLAAGDTFRAAAREQLVVWGERNGVQVIAQDGGDSAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVV
QKADPTGPHEIMLVLDANNGQNALSQVKSFDDALGLTGLILTKLDGTAKGGIIAAIAKQRPIPLRFIGVGESIDDLRPFI
AKDYVDALFD
MFSFFRKKKPVAPVTPESPLVVEPVQIDTAPINQTAEVVTDSAPAPSAALIQQHEAIAIETVIAEPAAAPFQSVEPDAPA
PAPAPAPAPAPAPAPAPAPIIEAAEPQAKLSWSERLKAGLTKTRDRLGKSLAGLFGGGQIDEDLYEELESVLLTADMGVD
ATQHLLDDVRNRVSLAGLKNGSELKGALQSSLTDLINPLQKPLDISTHKPFILMVAGVNGAGKTTSIGKLAKYFQGQGLS
VLLAAGDTFRAAAREQLVVWGERNGVQVIAQDGGDSAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVV
QKADPTGPHEIMLVLDANNGQNALSQVKSFDDALGLTGLILTKLDGTAKGGIIAAIAKQRPIPLRFIGVGESIDDLRPFI
AKDYVDALFD
Nucleotide
Download Length: 1233 bp
>NTDB_id=263741 C1H71_RS07255 WP_188053644.1 1623107..1624339(+) (pilA) [Iodobacter fluviatilis strain PCH194]
ATGTTCAGTTTTTTTCGCAAAAAAAAGCCGGTTGCACCGGTTACACCAGAATCACCACTGGTGGTAGAGCCTGTTCAAAT
CGACACGGCACCTATCAATCAAACAGCTGAAGTTGTAACTGACTCGGCTCCCGCTCCCTCTGCAGCCCTTATTCAGCAGC
ATGAAGCCATCGCCATTGAAACGGTGATAGCAGAGCCAGCCGCAGCCCCTTTTCAGAGCGTAGAGCCTGATGCTCCTGCT
CCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCAATTATTGAGGCGGCTGAGCCACA
AGCCAAGCTTTCTTGGTCTGAGCGCCTAAAAGCGGGTTTAACTAAAACCCGTGATCGTCTGGGTAAAAGCTTAGCGGGCC
TATTTGGTGGCGGCCAGATCGATGAAGATCTGTATGAAGAGCTGGAATCGGTGTTGCTCACCGCCGATATGGGTGTCGAT
GCAACACAACATTTGTTAGATGATGTACGAAATCGTGTAAGCCTTGCAGGGCTTAAAAATGGCAGTGAGCTAAAAGGTGC
ATTACAAAGCTCCCTCACTGATTTAATCAACCCACTACAAAAGCCGCTGGATATTAGCACCCATAAGCCATTTATTTTGA
TGGTAGCTGGCGTAAATGGTGCAGGTAAAACAACCAGCATCGGTAAATTAGCCAAGTATTTTCAAGGCCAAGGCCTCAGC
GTCTTACTCGCCGCTGGTGATACTTTCCGCGCTGCCGCGCGTGAGCAGTTGGTGGTATGGGGCGAGCGTAATGGTGTGCA
GGTGATTGCCCAAGATGGTGGTGATTCTGCAGCGGTGGCCTTTGATGCAGTAAACGCAGCCAAGGCGCGTGGCATTGATG
TGGTGATCGTCGATACCGCTGGCCGCCTGCCTACGCAATTACATTTGATGGAAGAAATAAAAAAAGTAAAACGCGTGGTA
CAAAAAGCCGATCCTACTGGCCCGCATGAAATCATGCTGGTGCTGGATGCCAATAACGGCCAGAACGCGCTCAGCCAAGT
AAAATCGTTCGACGATGCACTCGGCCTAACGGGTTTGATCTTGACCAAGCTCGACGGCACAGCCAAAGGCGGGATTATCG
CGGCCATTGCCAAACAGCGCCCTATTCCACTGCGCTTTATTGGCGTGGGCGAAAGCATCGACGATTTGCGCCCCTTTATT
GCCAAAGACTATGTAGACGCGCTGTTTGATTAA
ATGTTCAGTTTTTTTCGCAAAAAAAAGCCGGTTGCACCGGTTACACCAGAATCACCACTGGTGGTAGAGCCTGTTCAAAT
CGACACGGCACCTATCAATCAAACAGCTGAAGTTGTAACTGACTCGGCTCCCGCTCCCTCTGCAGCCCTTATTCAGCAGC
ATGAAGCCATCGCCATTGAAACGGTGATAGCAGAGCCAGCCGCAGCCCCTTTTCAGAGCGTAGAGCCTGATGCTCCTGCT
CCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCAATTATTGAGGCGGCTGAGCCACA
AGCCAAGCTTTCTTGGTCTGAGCGCCTAAAAGCGGGTTTAACTAAAACCCGTGATCGTCTGGGTAAAAGCTTAGCGGGCC
TATTTGGTGGCGGCCAGATCGATGAAGATCTGTATGAAGAGCTGGAATCGGTGTTGCTCACCGCCGATATGGGTGTCGAT
GCAACACAACATTTGTTAGATGATGTACGAAATCGTGTAAGCCTTGCAGGGCTTAAAAATGGCAGTGAGCTAAAAGGTGC
ATTACAAAGCTCCCTCACTGATTTAATCAACCCACTACAAAAGCCGCTGGATATTAGCACCCATAAGCCATTTATTTTGA
TGGTAGCTGGCGTAAATGGTGCAGGTAAAACAACCAGCATCGGTAAATTAGCCAAGTATTTTCAAGGCCAAGGCCTCAGC
GTCTTACTCGCCGCTGGTGATACTTTCCGCGCTGCCGCGCGTGAGCAGTTGGTGGTATGGGGCGAGCGTAATGGTGTGCA
GGTGATTGCCCAAGATGGTGGTGATTCTGCAGCGGTGGCCTTTGATGCAGTAAACGCAGCCAAGGCGCGTGGCATTGATG
TGGTGATCGTCGATACCGCTGGCCGCCTGCCTACGCAATTACATTTGATGGAAGAAATAAAAAAAGTAAAACGCGTGGTA
CAAAAAGCCGATCCTACTGGCCCGCATGAAATCATGCTGGTGCTGGATGCCAATAACGGCCAGAACGCGCTCAGCCAAGT
AAAATCGTTCGACGATGCACTCGGCCTAACGGGTTTGATCTTGACCAAGCTCGACGGCACAGCCAAAGGCGGGATTATCG
CGGCCATTGCCAAACAGCGCCCTATTCCACTGCGCTTTATTGGCGTGGGCGAAAGCATCGACGATTTGCGCCCCTTTATT
GCCAAAGACTATGTAGACGCGCTGTTTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
59.091 |
100 |
0.602 |