Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   APL_RS03725 Genome accession   NC_009053
Coordinates   825251..826198 (+) Length   315 a.a.
NCBI ID   WP_005607609.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 820251..831198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS03700 (APL_0710) lysC 820409..821761 (+) 1353 WP_005597077.1 lysine-sensitive aspartokinase 3 -
  APL_RS03705 (APL_0711) nrdR 821887..822336 (-) 450 WP_005597079.1 transcriptional regulator NrdR -
  APL_RS03710 (APL_0712) - 822336..822623 (-) 288 WP_005600927.1 YcgL domain-containing protein -
  APL_RS03715 (APL_0713) - 822613..824076 (-) 1464 WP_005620833.1 replicative DNA helicase -
  APL_RS03720 (APL_0714) - 824256..825164 (+) 909 WP_005597086.1 siderophore ABC transporter substrate-binding protein -
  APL_RS03725 (APL_0715) ceuB 825251..826198 (+) 948 WP_005607609.1 ABC transporter permease Machinery gene
  APL_RS03730 (APL_0716) - 826198..827139 (+) 942 WP_043880774.1 iron chelate uptake ABC transporter family permease subunit -
  APL_RS03735 (APL_0717) - 827141..827899 (+) 759 WP_005600933.1 ABC transporter ATP-binding protein -
  APL_RS03740 (APL_0718) - 828088..828768 (+) 681 WP_005597094.1 TIGR00153 family protein -
  APL_RS03745 (APL_0719) - 828778..830040 (+) 1263 WP_005600935.1 inorganic phosphate transporter -
  APL_RS03750 (APL_0720) - 830104..830709 (+) 606 WP_005597098.1 TIGR04211 family SH3 domain-containing protein -
  APL_RS03755 (APL_0721) - 830763..830990 (-) 228 WP_005600938.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34354.54 Da        Isoelectric Point: 9.6890

>NTDB_id=26374 APL_RS03725 WP_005607609.1 825251..826198(+) (ceuB) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MQKLTALNFLFLVLLFLLSISVGVADFQWRDLFTHTEQLELLFISRLPRTLAVVLVGATLGIAGMVLQIVLKNRFIEPSM
IGASQSAAIGILIVSLMFPATPLIMKMSFATLSALIGMGIFMLLLRRLPPHQKLMVPLIGIVFGNIIEAITTFVAYETDS
LQLLSVWFSGDFSGILAGRYELLWLTAGLAVLVYIMAEQLSIAGLGQNISTSLGINYRQMTWFALIVVAMITAVVVVTVG
QIPFIGLVVPNIISRLAGDRLRQNLPSVALLGANLVLLCDIIGRVVNAPYEVPISTIFGICGTIVFLYLLFRGKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=26374 APL_RS03725 WP_005607609.1 825251..826198(+) (ceuB) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGCAAAAACTAACCGCTTTAAATTTTTTATTTCTGGTCTTACTTTTTCTATTGAGTATTTCAGTAGGGGTTGCCGATTT
CCAATGGAGAGATCTTTTCACTCATACCGAACAGCTTGAATTACTTTTTATCAGTCGATTACCCAGAACGCTTGCCGTTG
TACTTGTCGGTGCCACACTTGGTATTGCCGGAATGGTACTTCAAATCGTACTTAAAAATCGTTTTATTGAACCCAGTATG
ATTGGAGCCAGCCAAAGTGCGGCAATCGGTATCTTAATTGTCAGCTTAATGTTTCCTGCCACACCGCTTATTATGAAAAT
GTCCTTTGCAACGTTAAGCGCATTAATCGGTATGGGGATTTTTATGCTGCTGCTTCGTCGATTACCCCCTCATCAAAAGT
TGATGGTTCCGCTCATCGGAATCGTATTCGGTAATATTATTGAGGCCATTACTACTTTCGTCGCATACGAAACCGACTCT
TTACAATTATTATCCGTTTGGTTCTCAGGCGACTTTTCCGGTATCTTAGCAGGGCGTTACGAATTATTATGGCTAACAGC
CGGGCTAGCCGTCCTTGTATATATTATGGCGGAACAACTCAGCATTGCCGGATTAGGTCAAAATATCAGTACCAGTTTAG
GTATCAATTACCGCCAAATGACTTGGTTTGCGTTAATTGTGGTTGCAATGATTACCGCGGTGGTTGTAGTTACGGTCGGA
CAAATTCCGTTTATCGGATTAGTTGTACCTAATATCATTTCTCGTTTAGCCGGTGACCGTTTACGCCAGAATTTACCTTC
AGTAGCATTACTCGGCGCGAACTTAGTCTTACTTTGTGACATTATCGGACGTGTGGTCAATGCGCCTTATGAAGTACCTA
TCTCGACCATCTTCGGGATTTGCGGAACGATTGTTTTTCTCTATTTACTGTTTAGAGGGAAAAAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(12-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.342

100

0.375