Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV401_RS03725 Genome accession   NZ_CP031254
Coordinates   742316..742819 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 737316..747819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS03700 - 737450..738502 (+) 1053 WP_071162906.1 extracellular solute-binding protein -
  DV401_RS03705 hslU 738572..739906 (-) 1335 WP_071162905.1 HslU--HslV peptidase ATPase subunit -
  DV401_RS03710 hslV 739917..740444 (-) 528 WP_005652018.1 ATP-dependent protease subunit HslV -
  DV401_RS03715 aphA 740664..741371 (+) 708 WP_005649426.1 acid phosphatase AphA -
  DV401_RS09615 - 741418..741713 (-) 296 Protein_701 transposase -
  DV401_RS09620 - 741814..742071 (-) 258 WP_080481793.1 helix-turn-helix domain-containing protein -
  DV401_RS03725 luxS 742316..742819 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  DV401_RS03730 - 743004..743477 (-) 474 WP_071162904.1 YqaA family protein -
  DV401_RS03735 - 743477..744079 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  DV401_RS03740 - 744195..744572 (+) 378 WP_103707991.1 PRD domain-containing protein -
  DV401_RS03745 rsmG 744712..745323 (+) 612 WP_071162903.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DV401_RS03750 - 745449..745823 (+) 375 WP_005659757.1 ATP synthase subunit I -
  DV401_RS03755 atpB 745860..746648 (+) 789 WP_071162902.1 F0F1 ATP synthase subunit A -
  DV401_RS03760 atpE 746704..746958 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  DV401_RS03765 atpF 747008..747478 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=263731 DV401_RS03725 WP_005662536.1 742316..742819(-) (luxS) [Haemophilus influenzae strain M25588]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=263731 DV401_RS03725 WP_005662536.1 742316..742819(-) (luxS) [Haemophilus influenzae strain M25588]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737