Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MMAR10_RS06285 Genome accession   NC_008347
Coordinates   1318048..1319424 (-) Length   458 a.a.
NCBI ID   WP_011643147.1    Uniprot ID   Q0AQD7
Organism   Maricaulis maris MCS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1313048..1324424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMAR10_RS06265 (Mmar10_1203) der 1313716..1315188 (+) 1473 WP_011643143.1 ribosome biogenesis GTPase Der -
  MMAR10_RS06270 (Mmar10_1204) - 1315195..1315911 (-) 717 WP_011643144.1 SDR family NAD(P)-dependent oxidoreductase -
  MMAR10_RS06275 (Mmar10_1205) purF 1315908..1317389 (-) 1482 WP_011643145.1 amidophosphoribosyltransferase -
  MMAR10_RS06280 (Mmar10_1206) - 1317386..1318030 (-) 645 WP_011643146.1 CvpA family protein -
  MMAR10_RS06285 (Mmar10_1207) radA 1318048..1319424 (-) 1377 WP_011643147.1 DNA repair protein RadA Machinery gene
  MMAR10_RS06290 (Mmar10_1208) alr 1319512..1320612 (-) 1101 WP_011643148.1 alanine racemase -
  MMAR10_RS06295 (Mmar10_1209) - 1320605..1322089 (-) 1485 WP_011643149.1 replicative DNA helicase -
  MMAR10_RS06300 (Mmar10_1210) rplI 1322273..1322902 (-) 630 WP_011643150.1 50S ribosomal protein L9 -
  MMAR10_RS06305 (Mmar10_1211) rpsR 1322915..1323169 (-) 255 WP_011643151.1 30S ribosomal protein S18 -
  MMAR10_RS06310 (Mmar10_1212) rpsF 1323181..1323534 (-) 354 WP_011643152.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47722.49 Da        Isoelectric Point: 5.1061

>NTDB_id=26370 MMAR10_RS06285 WP_011643147.1 1318048..1319424(-) (radA) [Maricaulis maris MCS10]
MARAETNYVCQSCGGAQPKWAGRCDACGEWNTLIEEAPSAPLGTQATAGKRRGRAARLNLVDLGSESPEPARLQSGISEL
DRVCGGGLVPGSAILVGGDPGIGKSTLLLQMMAQIARSEARAIYVSGEEAIDQVRRRARRLGLADAPVSLASETSLNDIL
DGLKAEKPDIVVIDSIQTVWSDQLAAAPGTVAQVRACAQELVRFAKKSNCTVILVGHVTKDGQIAGPRVVEHMVDAVLYF
EGERSHQFRILRAVKNRFGPTDEIGVFEMGDKGLAEVTNPSSLFLDGRGGDTPGAAVFAGMEGTRPVLSEIQALVAPAAF
GTARRAVVGWDSGRLAMVLAVLEARCGVDIAGRDIFLNVAGGLKITEPAADLAVAAAIVSSALDVALPADGVVYGEISLS
GDVRPVGRSDSRLKEAAKLGFTRAIAPQAAADETAPIRVDGVATALELVQTLRAMAGE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=26370 MMAR10_RS06285 WP_011643147.1 1318048..1319424(-) (radA) [Maricaulis maris MCS10]
ATGGCGCGCGCTGAAACCAATTATGTCTGCCAGTCCTGTGGCGGGGCCCAGCCCAAATGGGCCGGGCGCTGTGATGCCTG
TGGTGAGTGGAACACCCTGATCGAGGAAGCGCCCTCGGCACCGCTGGGCACCCAGGCCACTGCGGGGAAACGACGGGGCC
GCGCCGCGCGTCTGAACCTGGTTGATCTGGGCTCGGAAAGCCCGGAACCCGCGCGCCTGCAATCCGGCATCAGTGAGCTC
GACAGGGTCTGCGGTGGCGGCCTGGTGCCCGGCTCGGCCATTCTGGTCGGCGGCGATCCAGGCATCGGCAAATCGACGCT
CCTGCTCCAGATGATGGCCCAGATCGCCCGCAGCGAAGCCCGCGCCATCTATGTCTCCGGCGAGGAGGCCATTGACCAGG
TCCGCCGCCGGGCCCGACGGCTCGGCCTGGCAGACGCTCCGGTCTCACTGGCCTCGGAGACTTCCCTGAACGACATTCTC
GACGGGCTGAAGGCGGAAAAGCCCGACATTGTCGTGATCGATTCGATCCAGACCGTCTGGTCCGACCAACTGGCCGCGGC
GCCGGGTACGGTCGCCCAGGTCCGTGCCTGCGCCCAGGAGCTGGTCCGCTTCGCCAAGAAATCCAACTGCACGGTCATTC
TGGTCGGCCATGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTGGTCGAGCACATGGTCGATGCCGTGCTCTATTTC
GAGGGTGAACGCTCGCACCAGTTCCGCATCCTGCGCGCGGTCAAGAACCGCTTCGGCCCAACCGACGAGATCGGCGTGTT
CGAAATGGGCGACAAGGGACTGGCCGAGGTCACCAACCCCTCCTCACTCTTTCTTGACGGACGCGGCGGTGACACGCCGG
GCGCTGCCGTCTTTGCCGGCATGGAGGGAACCCGCCCGGTCCTGTCCGAAATCCAGGCGCTGGTCGCACCGGCCGCCTTC
GGCACCGCGCGCCGGGCCGTGGTCGGCTGGGACAGTGGCCGCCTGGCCATGGTGCTGGCGGTCCTGGAAGCCCGCTGCGG
TGTCGATATTGCCGGACGCGACATTTTTCTCAACGTGGCGGGCGGTCTGAAAATCACCGAACCGGCCGCCGATCTGGCCG
TTGCGGCGGCCATCGTGTCCTCCGCGCTCGACGTGGCCCTGCCCGCCGACGGGGTCGTTTACGGAGAAATCAGTCTTTCC
GGCGATGTTCGTCCGGTCGGACGCAGTGATTCGCGCCTCAAGGAAGCTGCCAAGCTCGGCTTCACGCGGGCCATCGCCCC
CCAGGCTGCGGCCGACGAGACCGCCCCGATCCGGGTTGATGGCGTGGCCACGGCGCTCGAATTGGTGCAAACTCTGCGGG
CTATGGCGGGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0AQD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.487
  radA Streptococcus pneumoniae Rx1

44.658

100

0.456
  radA Streptococcus pneumoniae R6

44.658

100

0.456
  radA Streptococcus pneumoniae TIGR4

44.658

100

0.456
  radA Streptococcus pneumoniae D39

44.658

100

0.456
  radA Streptococcus mitis SK321

44.444

100

0.454
  radA Streptococcus mitis NCTC 12261

44.444

100

0.454

Multiple sequence alignment