Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WM46_RS09635 Genome accession   NZ_CP025757
Coordinates   1934388..1935017 (-) Length   209 a.a.
NCBI ID   WP_102602127.1    Uniprot ID   A0A8I0MIV0
Organism   Citrobacter freundii complex sp. CFNIH2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929388..1940017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM46_RS09620 (WM46_09515) helD 1929629..1931683 (-) 2055 WP_102602125.1 DNA helicase IV -
  WM46_RS09625 (WM46_09520) - 1931807..1932265 (+) 459 WP_043001155.1 YccF domain-containing protein -
  WM46_RS09630 (WM46_09525) yccS 1932272..1934434 (+) 2163 WP_102602126.1 YccS family putative transporter -
  WM46_RS09635 (WM46_09530) sxy/tfoX 1934388..1935017 (-) 630 WP_102602127.1 TfoX/Sxy family DNA transformation protein Regulator
  WM46_RS09640 (WM46_09535) sulA 1935235..1935744 (+) 510 WP_061077057.1 SOS-induced cell division inhibitor SulA -
  WM46_RS09645 (WM46_09540) ompA 1936100..1937152 (+) 1053 WP_187394476.1 porin OmpA -
  WM46_RS09650 (WM46_09545) matP 1937231..1937683 (-) 453 WP_061077056.1 macrodomain Ter protein MatP -
  WM46_RS09655 (WM46_09550) - 1937869..1939629 (+) 1761 WP_102602129.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24229.18 Da        Isoelectric Point: 9.2686

>NTDB_id=263697 WM46_RS09635 WP_102602127.1 1934388..1935017(-) (sxy/tfoX) [Citrobacter freundii complex sp. CFNIH2]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDSLWRDQQQLIQLSKFSLDAALQEKLSRCSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPAPMSVEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=263697 WM46_RS09635 WP_102602127.1 1934388..1935017(-) (sxy/tfoX) [Citrobacter freundii complex sp. CFNIH2]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGCTACAGTTTGACTATCCGGAATACCGTTTTTGCGATGGTCGCCAATGGGGAGCTCTATCTGCGGGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCAGTCTGGCTGACATTTCTTAAACGTGGGCGTCCGGTCATGCTTAAC
TATTATCAGGTCGATGACAGTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTATCGAAGTTTTCGCTGGATGCCGCGTT
GCAGGAGAAGTTGTCCCGCTGTTCTCAGCAGCGGCTAAAGGATCTCCCCAATATGACTTTTCATCTGGAGAGTCTGCTGA
ATGAAGCGGGGATCTACGACGTCGCCACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTGCGACAGATGAAT
AAATCCATTACTGACAAGGTACTGTTTAATCTTGAAGGGGCCATTTATGGCATTCATGAGGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCGCCGGCGCCGATGTCGGTGGAGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71

95.694

0.679

Multiple sequence alignment