Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV446_RS05365 Genome accession   NZ_CP031252
Coordinates   1039910..1040428 (-) Length   172 a.a.
NCBI ID   WP_049252834.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1034910..1045428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS05355 - 1035059..1036936 (-) 1878 WP_074896853.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DV446_RS05360 pilQ 1037746..1039890 (-) 2145 WP_074896856.1 type IV pilus secretin PilQ Machinery gene
  DV446_RS05365 pilP 1039910..1040428 (-) 519 WP_049252834.1 pilus assembly protein PilP Machinery gene
  DV446_RS05370 - 1040447..1041073 (-) 627 WP_049252880.1 type 4a pilus biogenesis protein PilO -
  DV446_RS05375 pilN 1041075..1041734 (-) 660 WP_074896860.1 PilN domain-containing protein Machinery gene
  DV446_RS05380 pilM 1041737..1042834 (-) 1098 WP_074897126.1 type IV pilus assembly protein PilM -
  DV446_RS05385 - 1042984..1045392 (+) 2409 WP_074896863.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19081.54 Da        Isoelectric Point: 5.0011

>NTDB_id=263663 DV446_RS05365 WP_049252834.1 1039910..1040428(-) (pilP) [Neisseria elongata strain M15911]
MVKKLCLLSSMLLLTACDAEPGDLREWVNATKKEAEGKFTPVDIPQGAPQLTYTPPVQPTLDAFNSKRLSTNQNGVNAPD
LNRPKEVLEAFGLDSIKYVGSFNQKGKISAFVEVDGHVYTVRKGNYIGQNYGRITNIRADAIDITELVEDAYGNWTFRQT
ELILNDSDQAKN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263663 DV446_RS05365 WP_049252834.1 1039910..1040428(-) (pilP) [Neisseria elongata strain M15911]
ATGGTCAAAAAACTTTGTTTGTTATCCAGTATGTTACTACTGACAGCATGCGATGCGGAACCAGGTGATCTTCGCGAATG
GGTTAATGCAACAAAAAAAGAGGCTGAGGGAAAGTTTACTCCTGTAGATATTCCTCAAGGGGCACCTCAGTTGACTTATA
CTCCTCCTGTGCAACCAACATTAGATGCGTTTAATAGTAAAAGGTTGAGTACTAATCAAAATGGTGTTAATGCTCCAGAT
TTGAATAGACCAAAAGAGGTGTTAGAGGCTTTTGGATTAGACAGCATTAAATATGTTGGCTCATTTAATCAAAAAGGTAA
AATATCAGCCTTTGTTGAGGTAGATGGCCATGTTTATACTGTACGGAAAGGTAATTATATCGGTCAAAACTATGGGCGAA
TCACAAATATAAGGGCGGATGCAATAGATATAACGGAATTAGTTGAAGATGCTTATGGTAATTGGACTTTCCGTCAAACT
GAATTAATATTAAACGATTCGGATCAGGCTAAAAATTAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

44.643

97.674

0.436