Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV446_RS05220 Genome accession   NZ_CP031252
Coordinates   1007514..1008119 (-) Length   201 a.a.
NCBI ID   WP_074896790.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002514..1013119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS05215 hemB 1006438..1007439 (+) 1002 WP_074896788.1 porphobilinogen synthase -
  DV446_RS05220 recR 1007514..1008119 (-) 606 WP_074896790.1 recombination mediator RecR Machinery gene
  DV446_RS12655 - 1008112..1008258 (+) 147 WP_369668761.1 hypothetical protein -
  DV446_RS05225 glyA 1008233..1009483 (-) 1251 WP_074896793.1 serine hydroxymethyltransferase -
  DV446_RS05230 mglC 1009708..1010718 (-) 1011 WP_074896796.1 galactose/methyl galactoside ABC transporter permease MglC -
  DV446_RS05235 mglA 1010784..1012307 (-) 1524 WP_074896799.1 galactose/methyl galactoside ABC transporter ATP-binding protein MglA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22436.02 Da        Isoelectric Point: 6.0733

>NTDB_id=263660 DV446_RS05220 WP_074896790.1 1007514..1008119(-) (recR) [Neisseria elongata strain M15911]
MSKPQDAFSRLIHALKILPNVGPKSAQRMAYQLLQYNREGAKELVEALQHALKQVRHCTLCNTLCENELCEICANPDRDG
KRLMIVHMPADVAGMEAAHCHDGLYFVLMGHISPLQDMDLGHIALEQLVVRLQNSEIEEIIIATNFTAEGDATAYILAEL
LKNLPYKVSRLARGMPLGAELEYIDAGTLAQAVYDRKQLKE

Nucleotide


Download         Length: 606 bp        

>NTDB_id=263660 DV446_RS05220 WP_074896790.1 1007514..1008119(-) (recR) [Neisseria elongata strain M15911]
ATGTCCAAACCGCAAGATGCATTTTCCAGATTGATACATGCGCTGAAAATCCTGCCCAATGTCGGCCCGAAATCGGCCCA
GCGTATGGCCTACCAACTTCTCCAATACAACCGTGAAGGCGCGAAAGAACTGGTTGAGGCTTTGCAGCATGCGCTGAAAC
AAGTGCGGCATTGCACGCTTTGCAATACTTTGTGCGAGAATGAATTATGCGAAATCTGCGCCAATCCGGATCGGGACGGC
AAGCGGCTGATGATAGTTCATATGCCCGCCGATGTTGCCGGAATGGAAGCGGCGCATTGTCATGACGGCTTATATTTTGT
CCTGATGGGGCATATCAGCCCGCTGCAAGATATGGACTTGGGTCATATTGCATTGGAGCAATTGGTTGTAAGGCTGCAAA
ACAGCGAAATTGAGGAAATCATTATCGCCACAAATTTCACCGCCGAAGGCGATGCCACTGCCTACATTTTGGCCGAATTG
TTGAAAAACCTGCCTTATAAAGTCAGCCGTTTGGCACGCGGTATGCCGCTGGGGGCGGAACTGGAATATATTGATGCGGG
AACACTGGCTCAAGCAGTATATGACCGTAAGCAGTTAAAAGAGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-79)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

38.021

95.522

0.363
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.22

95.025

0.363