Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV446_RS01180 Genome accession   NZ_CP031252
Coordinates   235976..236455 (+) Length   159 a.a.
NCBI ID   WP_070452740.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 230976..241455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS01165 cas4 231400..232050 (+) 651 WP_074895928.1 CRISPR-associated protein Cas4 -
  DV446_RS01170 cas1c 232637..233650 (+) 1014 WP_074895931.1 type I-C CRISPR-associated endonuclease Cas1c -
  DV446_RS01175 cas2 233725..234018 (+) 294 WP_070540902.1 CRISPR-associated endonuclease Cas2 -
  DV446_RS01180 luxS 235976..236455 (+) 480 WP_070452740.1 S-ribosylhomocysteine lyase Regulator
  DV446_RS01185 - 236475..237179 (+) 705 WP_074895934.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  DV446_RS01190 - 237264..237980 (+) 717 WP_074895936.1 phosphoglycolate phosphatase -
  DV446_RS01195 recX 238061..238510 (+) 450 WP_074895939.1 recombination regulator RecX Regulator
  DV446_RS01200 - 238660..239481 (+) 822 WP_074895942.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  DV446_RS01205 - 239689..241224 (+) 1536 WP_074895945.1 sodium-dependent transporter -
  DV446_RS01210 - 241221..241331 (+) 111 WP_040665779.1 methionine/alanine import family NSS transporter small subunit -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17899.42 Da        Isoelectric Point: 4.8167

>NTDB_id=263645 DV446_RS01180 WP_070452740.1 235976..236455(+) (luxS) [Neisseria elongata strain M15911]
MSEIQIEKKMNVESFNLDHTKVKAPYVRLACVTDGDFGDKIYKYDLRVCQPNQDHMEMPSLHSLEHLMAELSRNHSDKIV
DISPMGCQTGFYIALLNMGDYDEVLQLIENTLKDVLSATEVPACNVVQCGWAASHSLEGAQQIARGLLDKRGEWPQVFA

Nucleotide


Download         Length: 480 bp        

>NTDB_id=263645 DV446_RS01180 WP_070452740.1 235976..236455(+) (luxS) [Neisseria elongata strain M15911]
ATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAAGCCCCTTATGT
GCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAG
ACCATATGGAAATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCTGATAAAATCGTG
GACATCAGCCCCATGGGTTGTCAGACCGGTTTCTATATCGCCCTGCTGAACATGGGTGATTATGACGAGGTTTTGCAACT
GATTGAAAATACATTGAAAGATGTTTTATCCGCAACGGAAGTCCCGGCCTGCAACGTCGTCCAGTGCGGCTGGGCGGCCA
GCCACAGTTTGGAAGGGGCGCAGCAAATCGCGCGCGGCCTGCTCGACAAACGCGGCGAGTGGCCGCAAGTGTTTGCCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.361

90.566

0.384