Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CV83906_RS02190 Genome accession   NZ_CP025753
Coordinates   191410..192039 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CV839-06     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 186410..197039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV83906_RS02175 (CV83906_0221) helD 186652..188706 (-) 2055 WP_000420537.1 DNA helicase IV -
  CV83906_RS02180 (CV83906_0222) yccF 188829..189275 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CV83906_RS02185 (CV83906_0223) yccS 189285..191447 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CV83906_RS02190 (CV83906_0224) sxy/tfoX 191410..192039 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CV83906_RS02195 (CV83906_0225) sulA 192258..192767 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CV83906_RS02205 (CV83906_0227) ompA 193124..194176 (+) 1053 WP_001361736.1 porin OmpA -
  CV83906_RS02210 (CV83906_0228) matP 194252..194704 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CV83906_RS02215 (CV83906_0229) ycbZ 194890..196650 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=263632 CV83906_RS02190 WP_000839153.1 191410..192039(-) (sxy/tfoX) [Escherichia coli strain CV839-06]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=263632 CV83906_RS02190 WP_000839153.1 191410..192039(-) (sxy/tfoX) [Escherichia coli strain CV839-06]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment