Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV114_RS03760 Genome accession   NZ_CP031251
Coordinates   749085..749690 (+) Length   201 a.a.
NCBI ID   WP_101755492.1    Uniprot ID   A0A9X7I5K3
Organism   Neisseria subflava strain M18660     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744085..754690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03750 - 746656..747003 (+) 348 WP_070826225.1 ArsC family reductase -
  DV114_RS03755 - 747149..749002 (+) 1854 WP_114926165.1 SurA N-terminal domain-containing protein -
  DV114_RS03760 recR 749085..749690 (+) 606 WP_101755492.1 recombination mediator RecR Machinery gene
  DV114_RS03765 - 749753..750040 (-) 288 WP_003683377.1 hypothetical protein -
  DV114_RS03770 - 750255..751505 (+) 1251 WP_003746931.1 lipoprotein-releasing ABC transporter permease subunit -
  DV114_RS03775 lolD 751498..752181 (+) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV114_RS03780 recD 752314..754077 (+) 1764 WP_114926166.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22361.82 Da        Isoelectric Point: 5.0772

>NTDB_id=263601 DV114_RS03760 WP_101755492.1 749085..749690(+) (recR) [Neisseria subflava strain M18660]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALRQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVVRLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=263601 DV114_RS03760 WP_101755492.1 749085..749690(+) (recR) [Neisseria subflava strain M18660]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCATTAAAAATCCTGCCAAATGTCGGCCCGAAATCCGCACA
ACGCATGGCTTACCAGCTTTTACAGTACAAACGCGAAGAAGCGCAGGAGTTGGTGGACGCTTTGCAGTTTGCTTTGAGAC
AGGTGCAACATTGTCGGATGTGCAACACATTTTGCGAAGGCGATTTGTGTGAAATTTGTGCGGACGAAAAACGCGAGAAA
AGCCGCTTGATGATTGTGCATATGCCGGCGGATGTTTCCAGTATGGAGGCGGCTAATTGCCATGATGGCCTGTATTTTGT
TCTGATGGGGCAAGTCAGTCCGGCGCAGGGCATGGATATTTCGGCAGTAGCGTTAGATAAGCTGGTTGTCCGTTTGCAGG
CGAGTGATATTGAGGAAATTATCATTGCAACCAACTTCACAGCCGAAGGCGATGCGACAGCATATGTATTGGCGGAATTG
TTTAAAAATCTTCCTTATAAAGTCAGCCGATTGGCAAGGGGAATCCCTTTGGGTGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCACAGGCTGTTTACGATAGAAGAAATATTCAATCTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X7I5K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.071

98.01

0.373
  recR Bacillus subtilis subsp. subtilis str. 168

37.436

97.015

0.363