Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   APL_RS00395 Genome accession   NC_009053
Coordinates   85727..86332 (-) Length   201 a.a.
NCBI ID   WP_005620263.1    Uniprot ID   A3MYE6
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80727..91332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS00365 (APL_0068) - 81481..82470 (+) 990 WP_009875438.1 peptide ABC transporter ATP-binding protein -
  APL_RS00370 (APL_0069) psiE 82543..82953 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  APL_RS00375 (APL_0070) - 83031..83663 (-) 633 WP_009875439.1 hypothetical protein -
  APL_RS00380 (APL_0071) - 83718..84062 (-) 345 WP_005595710.1 RidA family protein -
  APL_RS00385 (APL_0072) - 84149..85186 (-) 1038 WP_005603248.1 branched-chain amino acid aminotransferase -
  APL_RS00390 (APL_0073) grxD 85329..85655 (-) 327 WP_011848306.1 Grx4 family monothiol glutaredoxin -
  APL_RS00395 (APL_0074) recR 85727..86332 (-) 606 WP_005620263.1 recombination mediator RecR Machinery gene
  APL_RS00400 (APL_0075) - 86403..86732 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  APL_RS00405 (APL_0076) - 86901..87767 (-) 867 WP_009875505.1 energy transducer TonB -
  APL_RS00410 (APL_0077) exbD 87777..88166 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  APL_RS00415 (APL_0078) exbB 88211..88663 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  APL_RS00420 (APL_0079) glpE 88851..89177 (+) 327 WP_005595720.1 thiosulfate sulfurtransferase GlpE -
  APL_RS00425 (APL_0080) - 89221..90066 (+) 846 WP_005611180.1 co-chaperone YbbN -
  APL_RS00430 (APL_0081) dhaM 90141..90548 (-) 408 WP_005600064.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  APL_RS00435 (APL_0082) dhaL 90557..91183 (-) 627 WP_005600065.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22168.37 Da        Isoelectric Point: 6.4865

>NTDB_id=26359 APL_RS00395 WP_005620263.1 85727..86332(-) (recR) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDVSL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=26359 APL_RS00395 WP_005620263.1 85727..86332(-) (recR) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCTGGTGTCGGCCCGAAATCCGCGCAGCG
TATGGCATACCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGTTGGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACTATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTGGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATGTTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3MYE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.5

99.502

0.423

Multiple sequence alignment