Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV114_RS00240 Genome accession   NZ_CP031251
Coordinates   40050..40556 (-) Length   168 a.a.
NCBI ID   WP_004518928.1    Uniprot ID   A0A9X7F3W6
Organism   Neisseria subflava strain M18660     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 35050..45556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS00215 - 35340..36065 (+) 726 WP_101756054.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DV114_RS00220 - 36149..36439 (+) 291 WP_003684646.1 phosphopantetheine-binding protein -
  DV114_RS00225 - 36436..37491 (+) 1056 WP_101756053.1 beta-ketoacyl synthase N-terminal-like domain-containing protein -
  DV114_RS00230 - 37473..38162 (+) 690 WP_101756052.1 hypothetical protein -
  DV114_RS00235 - 38270..39865 (-) 1596 WP_114926503.1 hypothetical protein -
  DV114_RS00240 luxS 40050..40556 (-) 507 WP_004518928.1 S-ribosylhomocysteine lyase Regulator
  DV114_RS00245 cyaY 40611..40934 (-) 324 WP_049323082.1 iron donor protein CyaY -
  DV114_RS00250 - 41006..41176 (+) 171 WP_036472795.1 lipoprotein -
  DV114_RS00255 lysA 41194..42414 (+) 1221 WP_101756051.1 diaminopimelate decarboxylase -
  DV114_RS00260 - 42517..42744 (-) 228 WP_101756050.1 SlyX family protein -
  DV114_RS00265 - 42746..44119 (-) 1374 WP_101756049.1 Na+/H+ antiporter family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18779.58 Da        Isoelectric Point: 5.2243

>NTDB_id=263572 DV114_RS00240 WP_004518928.1 40050..40556(-) (luxS) [Neisseria subflava strain M18660]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQKVADAWLASMQDVLTVQDQSKIPELNEYQCGTYLMHSLAEAHEIAQNVLARKVAVNKNEELT
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=263572 DV114_RS00240 WP_004518928.1 40050..40556(-) (luxS) [Neisseria subflava strain M18660]
ATGCCCCTACTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTGCGTGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTATTTGACCTGCGTTTTTGCATTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATTC
ACACGCTGGAGCATTTGTTCGCCGGCTTTATGCGCGACCACTTAAACGGCAACGGCGTCGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTCATCGGCACGCCCGACGAACAAAAAGTGGCCGACGCATGGCTCGCTTC
AATGCAGGATGTTTTGACCGTTCAAGACCAAAGCAAAATCCCCGAGCTGAACGAATACCAATGCGGTACTTACCTGATGC
ACTCGCTTGCTGAAGCACACGAAATTGCCCAAAACGTTTTGGCACGCAAAGTAGCCGTCAATAAAAACGAAGAACTGACA
TTGGACGAAAGCCTGTTAAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X7F3W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768