Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV389_RS04180 Genome accession   NZ_CP031250
Coordinates   847986..848588 (+) Length   200 a.a.
NCBI ID   WP_005641249.1    Uniprot ID   A0ABX3BRK5
Organism   Haemophilus influenzae strain M21384     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842986..853588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS04165 (DV389_04165) - 843843..846443 (+) 2601 WP_114893187.1 penicillin-binding protein 1A -
  DV389_RS04170 (DV389_04170) - 846520..847365 (+) 846 WP_114893188.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV389_RS04175 (DV389_04175) - 847524..847853 (+) 330 WP_105904681.1 YbaB/EbfC family nucleoid-associated protein -
  DV389_RS04180 (DV389_04180) recR 847986..848588 (+) 603 WP_005641249.1 recombination mediator RecR Machinery gene
  DV389_RS04185 (DV389_04185) - 848604..850559 (+) 1956 WP_114893189.1 DNA topoisomerase III -
  DV389_RS04190 (DV389_04190) secG 850668..851009 (+) 342 WP_114893190.1 preprotein translocase subunit SecG -
  DV389_RS08995 - 851426..851617 (+) 192 WP_240317954.1 hypothetical protein -
  DV389_RS04205 (DV389_04205) - 851832..852053 (-) 222 WP_050847350.1 sulfurtransferase TusA family protein -
  DV389_RS04210 (DV389_04210) - 852050..852568 (-) 519 WP_041175236.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22079.17 Da        Isoelectric Point: 6.2854

>NTDB_id=263549 DV389_RS04180 WP_005641249.1 847986..848588(+) (recR) [Haemophilus influenzae strain M21384]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLAQALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=263549 DV389_RS04180 WP_005641249.1 847986..848588(+) (recR) [Haemophilus influenzae strain M21384]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCAAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGACATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTATCGCCACTTGATGGTATTGGTCCTCGCGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACTGTGGAAGGCGATGCAACAGCAAATTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGCCGTATCGCTCATGGCATCCCTGTGGGTGGGGAACTGGAAACTGTAGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43