Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   YDC107_RS21705 Genome accession   NZ_CP025707
Coordinates   4480625..4481254 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YDC107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4475625..4486254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YDC107_RS21685 (YDC107_4222) ycbZ 4476015..4477775 (-) 1761 WP_000156476.1 Lon protease family protein -
  YDC107_RS21690 (YDC107_4223) matP 4477961..4478413 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  YDC107_RS21695 (YDC107_4224) ompA 4478488..4479540 (-) 1053 WP_000750418.1 porin OmpA -
  YDC107_RS21700 (YDC107_4225) sulA 4479897..4480406 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  YDC107_RS21705 (YDC107_4227) sxy/tfoX 4480625..4481254 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  YDC107_RS21710 (YDC107_4226) yccS 4481217..4483379 (-) 2163 WP_000875041.1 YccS family putative transporter -
  YDC107_RS21715 (YDC107_4228) yccF 4483389..4483835 (-) 447 WP_001261235.1 YccF domain-containing protein -
  YDC107_RS21720 (YDC107_4229) helD 4483958..4486012 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=263510 YDC107_RS21705 WP_000839153.1 4480625..4481254(+) (sxy/tfoX) [Escherichia coli strain YDC107]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=263510 YDC107_RS21705 WP_000839153.1 4480625..4481254(+) (sxy/tfoX) [Escherichia coli strain YDC107]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment