Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV378_RS04085 Genome accession   NZ_CP031249
Coordinates   830656..831159 (-) Length   167 a.a.
NCBI ID   WP_050948806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 825656..836159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS04080 - 828922..830574 (+) 1653 WP_050948805.1 phospho-sugar mutase -
  DV378_RS04085 luxS 830656..831159 (-) 504 WP_050948806.1 S-ribosylhomocysteine lyase Regulator
  DV378_RS04090 - 831490..831963 (-) 474 WP_050848076.1 YqaA family protein -
  DV378_RS04095 - 831963..832565 (-) 603 WP_005666454.1 beta-phosphoglucomutase family hydrolase -
  DV378_RS04100 - 832680..833057 (+) 378 WP_048946801.1 PRD domain-containing protein -
  DV378_RS04105 rsmG 833197..833808 (+) 612 WP_114934770.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DV378_RS04110 - 833927..834301 (+) 375 WP_050848074.1 ATP synthase subunit I -
  DV378_RS04115 atpB 834329..835117 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  DV378_RS04120 atpE 835173..835427 (+) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  DV378_RS04125 atpF 835477..835947 (+) 471 WP_005649414.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18596.27 Da        Isoelectric Point: 5.2115

>NTDB_id=263475 DV378_RS04085 WP_050948806.1 830656..831159(-) (luxS) [Haemophilus influenzae strain M15895]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPRGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQQVSEAWLASMQDVLGVQDQTAIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLA
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=263475 DV378_RS04085 WP_050948806.1 830656..831159(-) (luxS) [Haemophilus influenzae strain M15895]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCGCCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAGAGGTATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGTGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGTACTGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGCAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAACCGCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGTGGTATAGGGGTAAATAAAAATGAAGATTTGGCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

75.904

99.401

0.754

Multiple sequence alignment