Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   DV378_RS04015 Genome accession   NZ_CP031249
Coordinates   809620..811467 (+) Length   615 a.a.
NCBI ID   WP_061832737.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 804620..816467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS03990 yihI 805905..806465 (+) 561 WP_061671326.1 Der GTPase-activating protein YihI -
  DV378_RS03995 - 806469..806909 (+) 441 WP_061671325.1 DUF2489 domain-containing protein -
  DV378_RS04000 - 806973..807599 (-) 627 WP_021034485.1 response regulator -
  DV378_RS04005 lysA 807804..809051 (-) 1248 WP_114934769.1 diaminopimelate decarboxylase -
  DV378_RS09810 - 809100..809216 (-) 117 WP_021034483.1 lipoprotein -
  DV378_RS04010 cyaY 809313..809618 (+) 306 WP_005629875.1 iron donor protein CyaY -
  DV378_RS04015 recQ 809620..811467 (+) 1848 WP_061832737.1 DNA helicase RecQ Machinery gene
  DV378_RS04020 proS 811564..813282 (+) 1719 WP_050948795.1 proline--tRNA ligase -
  DV378_RS04025 lptD 813367..815715 (-) 2349 WP_050948796.1 LPS assembly protein LptD -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 69706.05 Da        Isoelectric Point: 8.2085

>NTDB_id=263474 DV378_RS04015 WP_061832737.1 809620..811467(+) (recQ) [Haemophilus influenzae strain M15895]
MQDSPLPSKTIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVSFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATRQDILTHLNLENPHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIVVLRGMHNQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISSISKIVRNPQRQSVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTNNIEMLQINGVGSIKLERFGLPFIKLIQEHKAILANA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=263474 DV378_RS04015 WP_061832737.1 809620..811467(+) (recQ) [Haemophilus influenzae strain M15895]
ATGCAGGATTCTCCTTTACCATCAAAAACAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTTGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTGATCAATGCCGCTTTAAACGGACAAGATGCTTTGGTGGTAATGGCAACGGGGA
ATGGTAAATCGCTTTGTTACCAAATTCCCGCCCTTTGTTTTGAGGGTTTAACGTTAGTGATTTCTCCGCTGATTTCTTTG
ATGAAGGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTGCTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGTAAAGTCAGCTTTATTGCAATTGATGAAGCACACTGTATTTCTCAATGGGGGCATGAT
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCGAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTACGCAACTCGTCAAGATATTTTGACACATCTTAATCTAGAAAATCCGCATAAATATATTGGTAGTTTTGATCGAC
CAAACATTCGTTATACCTTGGAAGAAAAATATAAACCAATGGAGCAATTGACACGTTTTGTGTTGGCTCAAAAGGGCAAG
AGTGGGATTATTTATTGCAACAGTCGAAACAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTATCACGCGGGAATGGAAACGGCACGGCGTGATCGTGTGCAACAGGATTTTCAGCGTGATAATGTGCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGGTTTGTTGCCCATTTTGATTTGCCTCGTAGCATT
GAATCTTATTATCAAGAAACAGGTCGGGCAGGACGTGATGATTTACCTGCTGAGGCGGTTTTGTTTTATGAACCAGCGGA
TTACGCTTGGTTACAAAAAATTCTTTTAGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGAGAATTTGCAGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGTGAGCATCGACAAACACCATGC
AATAACTGTGATATATGCCTTGATCCTCCTAAAAAATATGATGGATTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTCGGTGCGCATTATGTGATAGTGGTGTTGCGTGGAATGCATAATCAGAAAATTATTGAACGCC
AGCACGATAAACTTTCAGTGTATGGTATCGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCCGTCATTCGCCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTCATCAGTGAATTAAATCCAACGTTGCAGCTTACCGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTTCAATCAGTAAAATTGTCCGTAATCCACAACGCCAAAGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCA
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACGAACAATATTGAAATGTTGCAAATTAA
TGGCGTGGGTTCAATTAAATTAGAACGCTTTGGGCTGCCTTTTATTAAACTTATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(409-518)

DEAD/DEAH box helicase (DEAD)

(32-188)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.765

96.911

0.385

Multiple sequence alignment