Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV378_RS01900 Genome accession   NZ_CP031249
Coordinates   398582..399247 (+) Length   221 a.a.
NCBI ID   WP_050846688.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 393582..404247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01875 crp 394467..395141 (-) 675 WP_032824524.1 cAMP-activated global transcriptional regulator CRP Regulator
  DV378_RS01880 - 395126..395377 (-) 252 WP_032824522.1 YheU family protein -
  DV378_RS01885 slmA 395400..396056 (-) 657 WP_050948673.1 nucleoid occlusion factor SlmA -
  DV378_RS01890 dut 396060..396515 (-) 456 WP_044330861.1 dUTP diphosphatase -
  DV378_RS01895 coaBC 397205..398419 (-) 1215 WP_050948674.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DV378_RS01900 radC 398582..399247 (+) 666 WP_050846688.1 DNA repair protein RadC Machinery gene
  DV378_RS01905 rpmB 399461..399697 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  DV378_RS01910 rpmG 399709..399879 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  DV378_RS01915 - 400226..401590 (+) 1365 WP_050948675.1 diaminobutyrate--2-oxoglutarate transaminase -
  DV378_RS01920 ddc 401782..403317 (+) 1536 WP_050948676.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24971.21 Da        Isoelectric Point: 6.5991

>NTDB_id=263458 DV378_RS01900 WP_050846688.1 398582..399247(+) (radC) [Haemophilus influenzae strain M15895]
MENNDDLMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSSDKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGVTEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=263458 DV378_RS01900 WP_050846688.1 398582..399247(+) (radC) [Haemophilus influenzae strain M15895]
ATGGAAAACAATGATGATTTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCTCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTACAA
GCAATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCCTGAAACTGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAAGAAAGAGAAGTGTTTATGGTTTTATTTTTGGATAATCAACATCGTCTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCTCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCAGCGGCTTTAATTTTGGCACATAATCATCCTTCAGGTGTAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCAGCTGAACTAATGGAAATTCGCGTACTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.285

100

0.973
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367

Multiple sequence alignment