Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C0V70_RS18810 Genome accession   NZ_CP025704
Coordinates   3786669..3788045 (-) Length   458 a.a.
NCBI ID   WP_102245407.1    Uniprot ID   A0A2K9NX72
Organism   Bacteriovorax stolpii strain DSM 12778     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3781669..3793045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0V70_RS18780 (C0V70_18780) hutI 3782516..3783727 (+) 1212 WP_102245401.1 imidazolonepropionase -
  C0V70_RS18785 (C0V70_18785) - 3783783..3784154 (+) 372 WP_158649757.1 Kazal-type serine protease inhibitor -
  C0V70_RS18790 (C0V70_18790) - 3784155..3784712 (-) 558 WP_102245403.1 TlpA disulfide reductase family protein -
  C0V70_RS18795 (C0V70_18795) - 3784746..3784952 (+) 207 WP_102245404.1 hypothetical protein -
  C0V70_RS18800 (C0V70_18800) glpK 3784988..3786478 (+) 1491 WP_102245405.1 glycerol kinase GlpK -
  C0V70_RS18805 (C0V70_18805) - 3786471..3786665 (-) 195 WP_102245406.1 hypothetical protein -
  C0V70_RS18810 (C0V70_18810) radA 3786669..3788045 (-) 1377 WP_102245407.1 DNA repair protein RadA Machinery gene
  C0V70_RS18815 (C0V70_18815) ligA 3788053..3789930 (-) 1878 WP_102245408.1 NAD-dependent DNA ligase LigA -
  C0V70_RS18820 (C0V70_18820) - 3789946..3791409 (-) 1464 WP_102245409.1 hypothetical protein -
  C0V70_RS18825 (C0V70_18825) - 3791406..3791717 (-) 312 WP_102245410.1 hypothetical protein -
  C0V70_RS18830 (C0V70_18830) - 3791858..3793036 (+) 1179 WP_102245411.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50880.24 Da        Isoelectric Point: 7.6750

>NTDB_id=263458 C0V70_RS18810 WP_102245407.1 3786669..3788045(-) (radA) [Bacteriovorax stolpii strain DSM 12778]
MAKKTSTFICQSCSYQTSKWMGKCPECGSWNSFTEETTVAAKDLNRAHKRTALGGEAPKLINEIVLEKQFRVVTGMGEFD
RVVGGGVVPGSLILIGGEPGIGKSTLLTAIMGRLSQSHAGQTVLYVSGEESVNQVAERSKRVGVNADNFYIYNETNWQKI
LEQINKLQPRFLVIDSIQTTSSSEIDSAPGTVSQIREVTYELMNHVKANGITCFVIGHITKEGSIAGPKILEHMVDTVIY
FEGDQFGHYRILRAMKNRFGNTNEVGIFEMKESGLDEVKNPSQYFLDDQLKESFGRSLTCIIEGSRSLFVEVQALVVDNK
FGNGRRTTHGIDNNRLSMMVAVIEKYFGLPLGFNDIYLNVVGGMKLTTRESDLSIIASLLSSYRSKPIDSSTIFVGEVGL
TGEVRSIPQMEMRIKEMAQLNYKRVVTSEKTARELKGKYDIEIIGLRQARDLDQFIGK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=263458 C0V70_RS18810 WP_102245407.1 3786669..3788045(-) (radA) [Bacteriovorax stolpii strain DSM 12778]
ATGGCCAAAAAGACCTCAACGTTTATTTGTCAGAGTTGTTCATACCAAACTTCAAAGTGGATGGGGAAATGTCCAGAGTG
TGGATCGTGGAACTCATTTACCGAAGAGACGACTGTTGCGGCCAAAGATCTAAATCGCGCTCATAAAAGAACGGCATTAG
GAGGGGAAGCCCCAAAGCTGATTAATGAAATCGTTTTAGAAAAGCAGTTTAGAGTTGTGACGGGAATGGGAGAATTTGAC
CGCGTTGTGGGTGGCGGGGTTGTTCCAGGATCACTGATTCTTATCGGTGGTGAGCCAGGAATTGGAAAGTCGACACTGCT
TACGGCGATTATGGGAAGACTTTCTCAATCACATGCAGGGCAGACTGTTCTCTATGTGAGTGGGGAAGAATCTGTTAACC
AGGTGGCGGAAAGATCAAAGAGAGTTGGTGTTAATGCTGACAATTTCTATATTTATAACGAAACAAATTGGCAGAAGATT
TTAGAGCAAATCAATAAACTCCAGCCGCGCTTTTTAGTTATCGACTCAATTCAGACGACGTCATCATCTGAAATTGATTC
AGCACCGGGAACGGTGTCTCAGATTCGCGAAGTGACTTATGAACTTATGAATCACGTGAAGGCCAATGGGATCACGTGTT
TTGTTATCGGTCACATCACGAAAGAAGGATCTATCGCCGGGCCAAAAATCCTTGAGCACATGGTCGATACTGTAATTTAT
TTTGAAGGGGATCAGTTTGGTCACTACAGAATTCTTCGCGCGATGAAAAACCGCTTCGGAAATACCAACGAGGTCGGGAT
TTTTGAAATGAAAGAAAGTGGGTTAGATGAAGTTAAAAATCCATCTCAATACTTCCTTGATGATCAATTGAAAGAATCTT
TTGGGCGCTCGTTGACTTGTATCATTGAAGGATCGCGTTCTCTCTTTGTAGAGGTTCAAGCATTGGTTGTTGATAATAAG
TTTGGTAACGGGCGCAGGACAACTCACGGAATTGATAACAACCGCCTTTCAATGATGGTGGCCGTTATTGAAAAATATTT
CGGATTGCCACTGGGGTTTAACGATATTTACTTAAACGTTGTTGGGGGAATGAAGCTTACGACAAGAGAGTCGGATCTCT
CGATCATTGCTTCTCTTTTAAGTTCATACCGTTCAAAACCAATTGACTCGAGCACGATTTTTGTCGGAGAGGTTGGGTTA
ACGGGGGAAGTTCGCTCGATTCCTCAGATGGAAATGAGAATCAAAGAAATGGCCCAGCTCAATTACAAACGAGTGGTCAC
TTCAGAAAAAACGGCAAGAGAGTTAAAAGGTAAATACGATATCGAGATTATTGGCCTTCGCCAGGCGCGAGACCTAGATC
AGTTTATCGGGAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9NX72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.554

98.472

0.498
  radA Streptococcus mitis SK321

49.777

97.817

0.487
  radA Streptococcus mitis NCTC 12261

49.777

97.817

0.487
  radA Streptococcus pneumoniae Rx1

49.777

97.817

0.487
  radA Streptococcus pneumoniae D39

49.777

97.817

0.487
  radA Streptococcus pneumoniae R6

49.777

97.817

0.487
  radA Streptococcus pneumoniae TIGR4

49.777

97.817

0.487

Multiple sequence alignment