Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   DV378_RS01405 Genome accession   NZ_CP031249
Coordinates   290957..292177 (-) Length   406 a.a.
NCBI ID   WP_111695722.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 285957..297177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01385 - 286039..286926 (-) 888 WP_050948614.1 ABC transporter permease subunit -
  DV378_RS01390 - 286916..287881 (-) 966 WP_050948615.1 ABC transporter permease subunit -
  DV378_RS01395 - 287881..289535 (-) 1655 Protein_275 ABC transporter substrate-binding protein -
  DV378_RS01400 - 289572..290960 (+) 1389 WP_111695721.1 YcjX family protein -
  DV378_RS01405 kpsS 290957..292177 (-) 1221 WP_111695722.1 capsule biosynthesis protein Regulator
  DV378_RS01410 - 292230..294233 (-) 2004 WP_240320400.1 capsular polysaccharide biosynthesis protein -
  DV378_RS01415 - 294275..295252 (-) 978 WP_061671256.1 glycosyltransferase -
  DV378_RS01420 - 295263..296822 (-) 1560 WP_050948620.1 EcbG -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 47042.16 Da        Isoelectric Point: 9.2747

>NTDB_id=263453 DV378_RS01405 WP_111695722.1 290957..292177(-) (kpsS) [Haemophilus influenzae strain M15895]
MNHYLDELVQSSKRILLLQGPIGHFFTDLSAWLVGQGKTVYKINFNGGDEHFYPSSIENTIAYRGSVSEFYPYLQLFCKQ
HNIDAMVCFGDNRKYHKIAKKISQDEKIPFWVFEEGYFRPDYVTLEKQGVNAFSPLPRQADFYLEQAENLPEPAVPLKLA
KGFLPMAKVAIAYYIKAYLGRDNYPKYQHHRILNLKYYIKLWVTSGIKRTCYYLRDRSFAKKVTKGELGYFFIVPLQVYD
DSQVKVHCDFNSVGEFLAEVLQSFATSAPNHLNLIIKHHPMDRGFIHYESVILEFESRYPQLKGRLFYVYDVSLPVLLRH
GKGMVTLNSTSGISALLHGMPVITLGRANYHFEGLTHQGDLASFWQNPTKPDMPVFEAYRKYHLNKTMINGSFYNRVILP
LHPDKN

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=263453 DV378_RS01405 WP_111695722.1 290957..292177(-) (kpsS) [Haemophilus influenzae strain M15895]
ATGAACCACTATTTAGATGAATTAGTCCAAAGTTCGAAACGGATTTTACTTTTGCAAGGACCAATCGGCCACTTTTTTAC
CGATCTTTCAGCTTGGTTAGTGGGACAAGGAAAAACCGTTTATAAAATCAATTTTAACGGTGGCGATGAGCATTTTTATC
CGTCATCGATTGAAAACACGATTGCTTATCGTGGCTCAGTGAGTGAGTTCTACCCTTACTTGCAACTATTTTGCAAACAA
CACAATATTGATGCGATGGTTTGCTTTGGTGACAACCGTAAATACCACAAAATTGCAAAAAAAATATCACAAGATGAAAA
AATTCCATTTTGGGTGTTTGAAGAAGGCTATTTCCGTCCTGATTACGTCACACTCGAAAAACAAGGGGTAAATGCGTTCT
CTCCTCTTCCTCGTCAAGCAGATTTCTATCTTGAGCAAGCCGAAAATTTACCTGAGCCAGCTGTACCACTTAAATTAGCC
AAAGGTTTTTTACCGATGGCAAAAGTGGCAATCGCTTATTATATTAAAGCTTATTTGGGGCGAGATAATTACCCGAAATA
CCAGCACCACCGTATTCTGAATCTGAAATACTATATAAAACTCTGGGTTACATCAGGCATTAAGCGGACTTGTTATTACT
TGCGTGATCGCTCGTTTGCAAAAAAAGTAACAAAAGGAGAACTCGGTTATTTTTTTATTGTACCACTGCAAGTTTACGAT
GACAGCCAAGTAAAAGTACATTGCGACTTCAATAGCGTCGGTGAATTCTTAGCTGAAGTACTACAGTCTTTTGCTACATC
TGCGCCTAATCATTTAAACTTGATCATTAAGCACCACCCAATGGATAGAGGTTTTATTCATTATGAGTCTGTTATTCTAG
AGTTTGAAAGCCGCTATCCTCAATTAAAAGGGCGACTATTCTATGTGTACGATGTGTCATTGCCTGTTCTACTTCGCCAT
GGAAAAGGCATGGTAACATTAAACAGTACGAGTGGTATTTCAGCCTTATTACATGGAATGCCCGTTATTACGCTTGGGCG
TGCTAATTATCATTTTGAAGGTCTTACACACCAAGGGGATTTGGCTTCATTTTGGCAAAATCCAACCAAGCCTGATATGC
CTGTATTTGAGGCTTACCGCAAATATCATCTGAATAAAACCATGATTAATGGTAGTTTTTATAATCGAGTGATCCTTCCC
TTACATCCGGATAAAAATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(84-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.852

96.305

0.365

Multiple sequence alignment