Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C0638_RS20745 Genome accession   NZ_CP025696
Coordinates   4668781..4670550 (-) Length   589 a.a.
NCBI ID   WP_102163746.1    Uniprot ID   -
Organism   Paenibacillus sp. lzh-N1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4663781..4675550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0638_RS20725 (C0638_20725) - 4664332..4664514 (+) 183 WP_233902239.1 hypothetical protein -
  C0638_RS20730 (C0638_20730) - 4664510..4665433 (+) 924 WP_233902339.1 PatB family C-S lyase -
  C0638_RS20735 (C0638_20735) - 4665607..4666769 (-) 1163 Protein_3999 IS3 family transposase -
  C0638_RS20740 (C0638_20740) rcrQ 4666944..4668794 (-) 1851 WP_058712594.1 ABC transporter ATP-binding protein Regulator
  C0638_RS20745 (C0638_20745) rcrP 4668781..4670550 (-) 1770 WP_102163746.1 ABC transporter ATP-binding protein Regulator
  C0638_RS20750 (C0638_20750) - 4670630..4671037 (-) 408 WP_058712108.1 MarR family winged helix-turn-helix transcriptional regulator -
  C0638_RS20755 (C0638_20755) - 4671268..4672011 (-) 744 WP_058712109.1 GTP cyclohydrolase, FolE2/MptA family -
  C0638_RS26010 - 4672001..4672132 (-) 132 WP_267893709.1 hypothetical protein -
  C0638_RS20760 (C0638_20760) - 4672149..4673159 (-) 1011 WP_102163748.1 GTP-binding protein -
  C0638_RS20765 (C0638_20765) rpsN 4673438..4673707 (-) 270 WP_025678316.1 30S ribosomal protein S14 -
  C0638_RS20770 (C0638_20770) - 4673738..4673992 (-) 255 WP_013371187.1 deoxycytidine triphosphate deaminase -
  C0638_RS20775 (C0638_20775) - 4674354..4675157 (-) 804 WP_102163750.1 ATP-binding protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64970.25 Da        Isoelectric Point: 7.0453

>NTDB_id=263426 C0638_RS20745 WP_102163746.1 4668781..4670550(-) (rcrP) [Paenibacillus sp. lzh-N1]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFSAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKAAVGIAQGTEFVEKMDGQYEGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=263426 C0638_RS20745 WP_102163746.1 4668781..4670550(-) (rcrP) [Paenibacillus sp. lzh-N1]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAGATTACAACCAAGCTGCAAACCGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACTGCCTCT
ACAGGAGTGGCTGTGGCTGTTCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGGCAGGCTAATGCCGAATTGACGAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGCCCGGGTATGACCTTTATTATGTCGGGTCTGAGTGTCTCAATCTATTGGATTGGCACTTACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGATGCGGAGGAACCTGTGCTTCGCAACATTAGCTTTTCGGCAAAACAGGGCGAGACAGTTGCCTTTATTGGCG
CAACAGGCAGCGGCAAAACCAGCGTAATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGAGAGGTGCTTGTGGAT
GGCGTGAATGTCAGAAATTATAAGCAGCAGACACTTCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCGTCCAACGTTTCGTATGGCGATAACGGAAGGGCAGAAGCATCGGAGAAACTCGTCAAAGCCGCCGTGG
GGATTGCCCAAGGTACGGAGTTTGTCGAAAAAATGGACGGTCAGTATGAAGGACGGATTTCACAAGGTGGAGCGAATGTG
TCCGGTGGTCAAAAGCAACGTCTGTCCATAGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCACTGGACTACAGAACAGACCGGATTCTGCGCTCCGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATAAAGGACGCTGACCGCATTATCGTACTGGACCAGGGCGAGATTGTAGGAAACGGCACA
CATGAAGAGCTGATGGCGAATTGTAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52

100

0.53

Multiple sequence alignment