Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C0638_RS20740 Genome accession   NZ_CP025696
Coordinates   4666944..4668794 (-) Length   616 a.a.
NCBI ID   WP_058712594.1    Uniprot ID   -
Organism   Paenibacillus sp. lzh-N1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4661944..4673794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0638_RS20720 (C0638_20720) - 4662999..4663502 (-) 504 WP_167347003.1 sigma-70 family RNA polymerase sigma factor -
  C0638_RS20725 (C0638_20725) - 4664332..4664514 (+) 183 WP_233902239.1 hypothetical protein -
  C0638_RS20730 (C0638_20730) - 4664510..4665433 (+) 924 WP_233902339.1 PatB family C-S lyase -
  C0638_RS20735 (C0638_20735) - 4665607..4666769 (-) 1163 Protein_3999 IS3 family transposase -
  C0638_RS20740 (C0638_20740) rcrQ 4666944..4668794 (-) 1851 WP_058712594.1 ABC transporter ATP-binding protein Regulator
  C0638_RS20745 (C0638_20745) rcrP 4668781..4670550 (-) 1770 WP_102163746.1 ABC transporter ATP-binding protein Regulator
  C0638_RS20750 (C0638_20750) - 4670630..4671037 (-) 408 WP_058712108.1 MarR family winged helix-turn-helix transcriptional regulator -
  C0638_RS20755 (C0638_20755) - 4671268..4672011 (-) 744 WP_058712109.1 GTP cyclohydrolase, FolE2/MptA family -
  C0638_RS26010 - 4672001..4672132 (-) 132 WP_267893709.1 hypothetical protein -
  C0638_RS20760 (C0638_20760) - 4672149..4673159 (-) 1011 WP_102163748.1 GTP-binding protein -
  C0638_RS20765 (C0638_20765) rpsN 4673438..4673707 (-) 270 WP_025678316.1 30S ribosomal protein S14 -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68152.92 Da        Isoelectric Point: 6.5552

>NTDB_id=263425 C0638_RS20740 WP_058712594.1 4666944..4668794(-) (rcrQ) [Paenibacillus sp. lzh-N1]
MDKNEHTVDSEHIKMKQQGPMGKGPTEGMGTGKKANDFKKNIRQLLSYIKAYAPMIILSMLLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKHFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHNFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=263425 C0638_RS20740 WP_058712594.1 4666944..4668794(-) (rcrQ) [Paenibacillus sp. lzh-N1]
ATGGACAAGAATGAACACACCGTCGACAGTGAGCATATCAAAATGAAACAGCAAGGTCCCATGGGTAAAGGTCCTACGGA
GGGGATGGGGACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATCCGTCAGCTCTTATCCTACATCAAGGCCTATGCGC
CTATGATTATCCTCTCTATGCTGCTGGCGCTGGCCGGTTCTGTCTTCAACGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGAATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTGGTTTT
ATATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCGAAAAATTAATCATATGCCTTTGAAGCATTTTGATGCTACGAGCTATGGTAATGTGCTAAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACATTAAACAACAGTCTCGGCACACTTGTCAGCGCCTTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACGCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTAGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTAGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAACTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCAATCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TTATACTGGACGAAGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAC
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.806

93.669

0.523

Multiple sequence alignment